diff generate_rank_wide.xml @ 2:caba07f41453 draft default tip

"planemo upload for repository https://github.com/secimTools/SECIMTools/tree/main/galaxy commit 498abad641099412df56f04ff6e144e4193bbc34-dirty"

--- a/generate_rank_wide.xml	Mon Mar 08 22:04:06 2021 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,55 +0,0 @@
-<tool id="secimtools_generate_rank_wide" name="Ranked wide file"  version="@WRAPPER_VERSION@">
-    <description>Generate a wide format file with ranked columns from an input wide file.</description>
-    <macros>
-        <import>macros.xml</import>
-    </macros>
-    <expand macro="requirements" />
-    <command detect_errors="exit_code"><![CDATA[
-addGroupRank.py
---wide $wide
---design $design
---out $out
-#if $ngroup:
-    --ngroup $ngroup
-#end if
---rank $rank
---uniqID $uniqID
-    ]]></command>
-    <inputs>
-        <param name="wide" type="data" format="tabular" label="Wide Dataset" help="Input dataset in wide format and tab separated. If file is not tab separated see TIP below."/>
-        <param name="design" type="data" format="tabular" label="Design File" help="Design file tab separated. Note you need a 'sampleID' column. If not tab separated see TIP below."/>
-        <param name="uniqID" type="text" size="30" value="rowID" label="Unique Feature ID" help="Name of the column in your Wide Dataset that has unique Feature IDs."/>
-        <param name="ngroup" type="integer" size="30" value="" optional="true" label="number of groups for each feature being ranked" help="number of bins/groups for each feature being ranked. If there is no input, the default behavir is ranking each column."/>
-        <param name="rank" type="text" size="30" value="Rank" label=" Name of flag column" help="The column name in your design file that contains the flags to specify whether a sampleID will be ranked in the input wide file."/>
-    </inputs>
-    <outputs>
-        <data format="tabular" name="out" label="${tool.name} on ${on_string}: Results Table"/>
-    </outputs>
-
-    <help><![CDATA[
-
-@TIP_AND_WARNING@
-
-**Tool Description**
-
-The tool is used to generate a wide format file with each column being ranked in the input wide format dataset.
-
---------------------------------------------------------------------------------
-
-**Input**
-
-    - Two input datasets are required.
-
-
---------------------------------------------------------------------------------
-
-**Output**
-
-The user will get a output file from the tool:
-
-(1) a wide format file with each column being ranked. The columns will be selected using the flag column in the design file.
-
-
-    ]]></help>
-    <expand macro="citations"/>
-</tool>