directory /test-data/ @ 2:caba07f41453 draft default tip

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file ST000006_anova_fixed_with_group_flags.tsv 85208 -rw-r--r--
file ST000006_anova_fixed_with_group_qq_plots.pdf 548880 -rw-r--r--
file ST000006_anova_fixed_with_group_qq_plots.png 464002 -rw-r--r--
file ST000006_anova_fixed_with_group_summary.tsv 405323 -rw-r--r--
file ST000006_anova_fixed_with_group_volcano.pdf 423126 -rw-r--r--
file ST000006_bland_altman_plot_with_group_figure.pdf 2807913 -rw-r--r--
file ST000006_bland_altman_plot_with_group_flag_distribution.pdf 17978 -rw-r--r--
file ST000006_bland_altman_plot_with_group_flag_feature.tsv 1855 -rw-r--r--
file ST000006_bland_altman_plot_with_group_flag_sample.tsv 1714 -rw-r--r--
file ST000006_bland_altman_plot_with_group_flag_sample_02amm.tsv 1714 -rw-r--r--
file ST000006_bland_altman_plot_with_group_proportion_feature.tsv 1366 -rw-r--r--
file ST000006_bland_altman_plot_with_group_proportion_sample.tsv 2853 -rw-r--r--
file ST000006_coefficient_variation_flags_with_group_figure.pdf 90737 -rw-r--r--
file ST000006_coefficient_variation_flags_with_group_flag.tsv 3436 -rw-r--r--
file ST000006_compare_flags_output.tsv 139 -rw-r--r--
file ST000006_data.tsv 65732 -rw-r--r--
file ST000006_data_normalization_and_rescaling_mean_output.tsv 94592 -rw-r--r--
file ST000006_data_normalization_and_rescaling_vast_output.tsv 93489 -rw-r--r--
file ST000006_design.tsv 7217 -rw-r--r--
file ST000006_design_2_test_CV.tsv 6379 -rw-r--r--
file ST000006_design_group_2sample.tsv 6959 -rw-r--r--
file ST000006_design_group_name_underscore.tsv 9634 -rw-r--r--
file ST000006_distribution_features_with_group_figure.pdf 308879 -rw-r--r--
file ST000006_distribution_samples_with_group_figure.pdf 187832 -rw-r--r--
file ST000006_hierarchical_clustering_heatmap_figure.pdf 99093 -rw-r--r--
file ST000006_imputation_output_KNN.tsv 84966 -rw-r--r--
file ST000006_kruskal_wallis_with_group_flags.tsv 85818 -rw-r--r--
file ST000006_kruskal_wallis_with_group_summary.tsv 309243 -rw-r--r--
file ST000006_kruskal_wallis_with_group_volcano.pdf 379958 -rw-r--r--
file ST000006_lasso_enet_var_select_coefficients.tsv 115583 -rw-r--r--
file ST000006_lasso_enet_var_select_flags.tsv 28240 -rw-r--r--
file ST000006_lasso_enet_var_select_plots.pdf 2734983 -rw-r--r--
file ST000006_linear_discriminant_analysis_none_classification.tsv 7006 -rw-r--r--
file ST000006_linear_discriminant_analysis_none_classification_accuracy.tsv 14 -rw-r--r--
file ST000006_linear_discriminant_analysis_none_figure.pdf 27658 -rw-r--r--
file ST000006_linear_discriminant_analysis_none_scores.tsv 3760 -rw-r--r--
file ST000006_log_and_glog_transformation_glog_lambda_1000000.tsv 124947 -rw-r--r--
file ST000006_log_and_glog_transformation_log.tsv 123433 -rw-r--r--
file ST000006_magnitude_difference_flags_counts.tsv_Chardonnay, Carneros, CA 2003 (CH01).tsv 2913 -rw-r--r--
file ST000006_magnitude_difference_flags_counts.tsv_Chardonnay, Carneros, CA 2003 (CH02).tsv 2913 -rw-r--r--
file ST000006_magnitude_difference_flags_counts.tsv_Chardonnay, Carneros, CA 2004.tsv 2913 -rw-r--r--
file ST000006_magnitude_difference_flags_counts.tsv_Chardonnay, Monterey, CA 2003.tsv 2913 -rw-r--r--
file ST000006_magnitude_difference_flags_counts.tsv_Chardonnay, Napa, CA 2003.tsv 2913 -rw-r--r--
file ST000006_magnitude_difference_flags_counts.tsv_Chardonnay, SE Australia, 2004.tsv 2913 -rw-r--r--
file ST000006_magnitude_difference_flags_counts.tsv_Elevage Blanc, Napa, CA 2004.tsv 2687 -rw-r--r--
file ST000006_magnitude_difference_flags_counts.tsv_Fume Blanc, Napa, CA 2004.tsv 2913 -rw-r--r--
file ST000006_magnitude_difference_flags_counts.tsv_Pinot gris, Napa, CA 2004.tsv 2913 -rw-r--r--
file ST000006_magnitude_difference_flags_counts.tsv_Pinot gris, Oregon 2003.tsv 2913 -rw-r--r--
file ST000006_magnitude_difference_flags_counts.tsv_Riesling, CA 2004.tsv 2913 -rw-r--r--
file ST000006_magnitude_difference_flags_counts.tsv_Riesling, Finger Lakes, NY 2004.tsv 2913 -rw-r--r--
file ST000006_magnitude_difference_flags_counts.tsv_Sauvignon Blanc, Lake County, CA 2001.tsv 2913 -rw-r--r--
file ST000006_magnitude_difference_flags_counts.tsv_Sauvignon Blanc, Napa, CA 2004 (SB03).tsv 2913 -rw-r--r--
file ST000006_magnitude_difference_flags_counts.tsv_Sauvignon Blanc, Napa, CA 2004 (SB04).tsv 2913 -rw-r--r--
file ST000006_magnitude_difference_flags_counts.tsv_Viognier, Dunnigan Hills, CA 2004.tsv 2913 -rw-r--r--
file ST000006_magnitude_difference_flags_counts.tsv_Viognier, Napa, CA 2004.tsv 2913 -rw-r--r--
file ST000006_magnitude_difference_flags_counts.tsv_all.tsv 24383 -rw-r--r--
file ST000006_magnitude_difference_flags_figure.pdf 44514 -rw-r--r--
file ST000006_magnitude_difference_flags_flags.tsv 1134 -rw-r--r--
file ST000006_mahalanobis_distance_figure.pdf 357088 -rw-r--r--
file ST000006_mahalanobis_distance_pairwise.tsv 18272 -rw-r--r--
file ST000006_mahalanobis_distance_to_mean.tsv 2244 -rw-r--r--
file ST000006_merge_flags_output.tsv 34200 -rw-r--r--
file ST000006_modify_design_file_output.tsv 8126 -rw-r--r--
file ST000006_modify_design_output.tsv 8126 -rw-r--r--
file ST000006_modulated_modularity_clustering_figure.pdf 682658 -rw-r--r--
file ST000006_modulated_modularity_clustering_out.tsv 5822 -rw-r--r--
file ST000006_multiple_testing_adjustment_flags.tsv 1262 -rw-r--r--
file ST000006_multiple_testing_adjustment_outadjusted.tsv 2714 -rw-r--r--
file ST000006_partial_least_squares_none_classification.tsv 411 -rw-r--r--
file ST000006_partial_least_squares_none_classification_accuracy.tsv 14 -rw-r--r--
file ST000006_partial_least_squares_none_figure.pdf 19016 -rw-r--r--
file ST000006_partial_least_squares_none_scores.tsv 469 -rw-r--r--
file ST000006_partial_least_squares_none_weights.tsv 2456 -rw-r--r--
file ST000006_principal_component_analysis_figure.pdf 46958 -rw-r--r--
file ST000006_principal_component_analysis_load_out.tsv 62489 -rw-r--r--
file ST000006_principal_component_analysis_score_out.tsv 89790 -rw-r--r--
file ST000006_principal_component_analysis_summary_out.tsv 3211 -rw-r--r--
file ST000006_random_forest_figure.pdf 17013 -rw-r--r--
file ST000006_random_forest_out.tsv 71426 -rw-r--r--
file ST000006_random_forest_out2.tsv 1432 -rw-r--r--
file ST000006_remove_selected_features_samples_flags.tsv 84988 -rw-r--r--
file ST000006_remove_selected_features_samples_wide.tsv 37758 -rw-r--r--
file ST000006_run_order_regression_figure.pdf 361969 -rw-r--r--
file ST000006_run_order_regression_flags.tsv 808 -rw-r--r--
file ST000006_run_order_regression_table.tsv 4275 -rw-r--r--
file ST000006_scatter_plot_2D_default_figure.pdf 24441 -rw-r--r--
file ST000006_scatter_plot_2D_palette_color_figure.pdf 24610 -rw-r--r--
file ST000006_scatter_plot_3D_default_figure.pdf 27439 -rw-r--r--
file ST000006_scatter_plot_3D_palette_color_figure.pdf 27695 -rw-r--r--
file ST000006_standardized_euclidean_distance_figure.pdf 357823 -rw-r--r--
file ST000006_standardized_euclidean_distance_pairwise.tsv 18280 -rw-r--r--
file ST000006_standardized_euclidean_distance_to_mean.tsv 2232 -rw-r--r--
file ST000006_summarize_flags_outSummary.tsv 29636 -rw-r--r--
file ST000006_svm_classifier_target_classification.tsv 7006 -rw-r--r--
file ST000006_svm_classifier_target_classification_accuracy.tsv 12 -rw-r--r--
file ST000006_svm_classifier_train_classification.tsv 7006 -rw-r--r--
file ST000006_svm_classifier_train_classification_accuracy.tsv 12 -rw-r--r--
file ST000006_threshold_based_flags_output.tsv 3385 -rw-r--r--
file ST000006_ttest_select_unpaired_flags.tsv 85344 -rw-r--r--
file ST000006_ttest_select_unpaired_summary.tsv 307354 -rw-r--r--
file ST000006_ttest_select_unpaired_volcano.pdf 421812 -rw-r--r--
file ST000006_ttest_single_group_no_group_flags.tsv 963 -rw-r--r--
file ST000006_ttest_single_group_no_group_summary.tsv 4696 -rw-r--r--
file ST000006_ttest_single_group_no_group_volcano.pdf 17245 -rw-r--r--
file ST000006_ttest_single_group_with_group_flags.tsv 9657 -rw-r--r--
file ST000006_ttest_single_group_with_group_summary.tsv 46540 -rw-r--r--
file ST000006_ttest_single_group_with_group_volcano.pdf 67816 -rw-r--r--
file TEST0000_blank_feature_filtering_flags_outbff.tsv 11689 -rw-r--r--
file TEST0000_blank_feature_filtering_flags_outflags.tsv 4949 -rw-r--r--
file TEST0000_compound_identification_output.tsv 22836 -rw-r--r--
file TEST0000_data.tsv 212299 -rw-r--r--
file TEST0000_database.tsv 23780 -rw-r--r--
file TEST0000_design.tsv 400 -rw-r--r--
file TEST0000_mzrt_first.tsv 23339 -rw-r--r--
file TEST0000_mzrt_match_all.tsv 50900 -rw-r--r--
file TEST0000_mzrt_match_figure.pdf 21329 -rw-r--r--
file TEST0000_mzrt_match_matched.tsv 12371 -rw-r--r--
file TEST0000_mzrt_match_summary.tsv 281 -rw-r--r--
file TEST0000_mzrt_match_unmatched_first.tsv 15535 -rw-r--r--
file TEST0000_mzrt_match_unmatched_second.tsv 15823 -rw-r--r--
file TEST0000_mzrt_second.tsv 23853 -rw-r--r--
file TEST0000_retention_time_flags_figure.pdf 18015 -rw-r--r--
file TEST0000_retention_time_flags_flag.tsv 9045 -rw-r--r--
file TEST0000_rt.tsv 209541 -rw-r--r--
file data_4_ttest_pair.tsv 5691 -rwxr-xr-x
file design_4_ttest_pair.tsv 327 -rwxr-xr-x
file fly_test_design.tsv 1158 -rw-r--r--
file fly_test_sbys.tsv 17209 -rw-r--r--