Mercurial > repos > mandorodriguez > concat_fasta_files

changeset 0:fe8aed46e026 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author mandorodriguez
date Mon, 28 Sep 2015 13:19:32 -0400
parents
children
files concat_fasta_files.xml
diffstat 1 files changed, 36 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/concat_fasta_files.xml	Mon Sep 28 13:19:32 2015 -0400
@@ -0,0 +1,36 @@
+<tool id="concat_fasta_files" name="Concat fasta files" version="1.0.0">
+    <description>Concatenates fasta files you select from your history</description>
+    <command>
+        cat #for $q in $input_files# $q #end for# > $out_file1
+    </command>
+    <inputs>
+        <param name="input_files" type="data" multiple="true" optional="false" format="fasta" label="Input text files(s)" help="One or more FASTA files" />
+    </inputs>
+    <outputs>
+        <data name="out_file1" format="fasta" metadata_source="input_files"/>
+    </outputs>
+    <tests>
+    </tests>
+    <help>
+
+
+.. class:: infomark
+
+Provides a list of all fasta files in your history and allows you to select and concat them all together.
+
+.. class:: warningmark
+
+Does not account for any newlines in the files
+
+------
+
+.. class:: infomark
+
+**Tool Author**
+
+Mando Rodriguez
+    </help>
+</tool>
+
+
+