view append_gene_name.xml @ 1:f4e563843692 draft default tip

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<tool id="ensid_gene_append" name="EnsID Gene Name append" version="1.0">
    <description>Appends the Gene name to a gene table with the matching EnsID</description>
    <command interpreter="python">
        append_gene_name.py -t ${ensid_to_gene} -g ${gene_expression_file}
    </command>
    <inputs>
        <param name="ensid_to_gene" type="data" optional="false" format="text" label="EnsID to Gene Name Table" help="The file that contains the EnsID is one column and the matching Gene Name in the next.">
        </param>

        <param name="gene_expression_file" type="data" optional="false" format="text" label="Gene Expression table with EnsGeneIDs" help="The tabular file with the Gene Expression values.">
        </param>
    </inputs>
    <outputs>
        <data format="tabular" label="EnsGeneID table with Gene Names." name="" from_work_dir="table.txt" />
    </outputs>
    <tests>
    </tests>
    <help>


.. class:: infomark

Takes in a file with gene expression data and a file that has a mapping of EnsGene IDs to gene names and adds the real gene name to the row with the matching EnsID.


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.. class:: infomark

**Tool Author**

Mando Rodriguez
    </help>
</tool>