comparison fastq_dump_paired.xml @ 9:f21bcc7ffacf draft default tip

Uploaded

8:daebdda744fc

## ! We only have a simple single command here.
fastq-dump --log-level fatal --split-3 --accession ${accession_number} --ncbi_error_report never;
ls -lh | grep ${accession_number};
mv -v ${accession_number}_1.fastq R1.fastq;
mv -v ${accession_number}_2.fastq R2.fastq;
echo "Deleting any stored files in ~/ncbi";
rm -rf ~/ncbi/*
    </command>
    <inputs>
        <param name="accession_number" size="10" type="text" value="" label="Accession Number"/>
    </inputs>
    <outputs>

9:f21bcc7ffacf

## ! We only have a simple single command here.
fastq-dump --log-level fatal --split-3 --accession ${accession_number} --ncbi_error_report never;
ls -lh | grep ${accession_number};
mv -v ${accession_number}_1.fastq R1.fastq;
mv -v ${accession_number}_2.fastq R2.fastq;
    </command>
    <inputs>
        <param name="accession_number" size="10" type="text" value="" label="Accession Number"/>
    </inputs>
    <outputs>