diff fastq_dump_paired.xml @ 5:86e30bb1e54e draft

Uploaded
author mandorodriguez
date Thu, 21 Jan 2016 12:20:24 -0500
parents 6c9eb322892d
children aadca684d7c5
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--- a/fastq_dump_paired.xml	Wed Oct 28 17:43:11 2015 -0400
+++ b/fastq_dump_paired.xml	Thu Jan 21 12:20:24 2016 -0500
@@ -8,7 +8,7 @@
 ## The command is a Cheetah template which allows some Python based syntax.
 ## Lines starting hash hash are comments. Galaxy will turn newlines into spaces
 ## ! We only have a simple single command here.
-fastq-dump --log-level fatal --split-3 --accession ${accession_number};
+fastq-dump --log-level fatal --split-3 --accession ${accession_number} --ncbi_error_report never;
 ls -lh | grep ${accession_number};
 mv -v ${accession_number}_1.fastq R1.fastq;
 mv -v ${accession_number}_2.fastq R2.fastq;