Mercurial > repos > mandorodriguez > fastqdump_paired
diff fastq_dump_paired.xml @ 5:86e30bb1e54e draft
Uploaded
author | mandorodriguez |
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date | Thu, 21 Jan 2016 12:20:24 -0500 |
parents | 6c9eb322892d |
children | aadca684d7c5 |
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--- a/fastq_dump_paired.xml Wed Oct 28 17:43:11 2015 -0400 +++ b/fastq_dump_paired.xml Thu Jan 21 12:20:24 2016 -0500 @@ -8,7 +8,7 @@ ## The command is a Cheetah template which allows some Python based syntax. ## Lines starting hash hash are comments. Galaxy will turn newlines into spaces ## ! We only have a simple single command here. -fastq-dump --log-level fatal --split-3 --accession ${accession_number}; +fastq-dump --log-level fatal --split-3 --accession ${accession_number} --ncbi_error_report never; ls -lh | grep ${accession_number}; mv -v ${accession_number}_1.fastq R1.fastq; mv -v ${accession_number}_2.fastq R2.fastq;