Mercurial > repos > marcel > caddsuite_linux_x86_64
comparison CADDSuite/galaxyconfigs/tools/PropertyModifier.xml @ 5:b7a89b15646f
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| author | marcel |
|---|---|
| date | Tue, 12 Jul 2011 10:23:33 -0400 |
| parents | ff6df146c0d5 |
| children |
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| 4:02c8570cde57 | 5:b7a89b15646f |
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| 1 | 1 |
| 2 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.--> | 2 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.--> |
| 3 <tool id="propertymodifier" name="PropertyModifier" version="0.94"> | 3 <tool id="propertymodifier" name="PropertyModifier" version="0.95"> |
| 4 <description>modify molecule property tags</description> | 4 <description>modify molecule property tags</description> |
| 5 <command interpreter="bash"><![CDATA[../../PropertyModifier | 5 <command interpreter="bash"><![CDATA[../../PropertyModifier |
| 6 #if str( $i ) != '' and str( $i ) != 'None' : | 6 #if str( $i ) != '' and str( $i ) != 'None' : |
| 7 -i "$i" | 7 -i "$i" |
| 8 #end if | 8 #end if |
| 22 -new_name "$new_name" | 22 -new_name "$new_name" |
| 23 #end if | 23 #end if |
| 24 | tail -n 5 | 24 | tail -n 5 |
| 25 ]]></command> | 25 ]]></command> |
| 26 <inputs> | 26 <inputs> |
| 27 <param name="i" label="input file" optional="false" type="data" format="mol2/sdf/drf"/> | 27 <param name="i" optional="false" label="input file" type="data" format="mol2/sdf/drf"/> |
| 28 <param name="mode" label="'delete', 'add' or 'rename' properties" optional="false" type="select"> | 28 <param name="mode" optional="false" label="'delete', 'add' or 'rename' properties" type="select"> |
| 29 <option value="add">add</option> | 29 <option value="add">add</option> |
| 30 <option value="rename">rename</option> | 30 <option value="rename">rename</option> |
| 31 <option value="delete">delete</option> | 31 <option value="delete">delete</option> |
| 32 </param> | 32 </param> |
| 33 <param name="name" label="property name ('all' will erase all properties if in delete-mode)" optional="false" area="true" type="text" size="1x15"/> | 33 <param name="name" optional="false" label="property name ('all' will erase all properties if in delete-mode)" area="true" type="text" size="1x15"/> |
| 34 <param name="value" label="property value (in case of prop. adding only)" optional="true" area="true" type="text" size="1x15"/> | 34 <param name="value" optional="true" label="Optional: property value (in case of prop. adding only)" area="true" type="text" size="1x15"/> |
| 35 <param name="new_name" label="new property name (in case of renaming only)" optional="true" area="true" type="text" size="1x15"/> | 35 <param name="new_name" optional="true" label="Optional: new property name (in case of renaming only)" area="true" type="text" size="1x15"/> |
| 36 </inputs> | 36 </inputs> |
| 37 <outputs> | 37 <outputs> |
| 38 <data name="o" format="mol2/sdf/drf" format_source="i"/> | 38 <data name="o" format="mol2/sdf/drf" format_source="i"/> |
| 39 </outputs> | 39 </outputs> |
| 40 <help>With this tools you can add, rename or delete molecule property tags. | 40 <help>With this tools you can add, rename or delete molecule property tags. |