comparison CADDSuite/galaxyconfigs/tools/ProteinCheck.xml @ 5:b7a89b15646f

Uploaded

4:02c8570cde57

<!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.-->
<tool id="proteincheck" name="ProteinCheck" version="0.94">
    <description>quality check for proteins structures</description>
    <command interpreter="bash"><![CDATA[../../ProteinCheck 
#if str( $i ) != ''  and str( $i ) != 'None' :
   -i "$i"
#end if

   -bc
#end if
 | tail -n 5
]]></command>
    <inputs>
        <param name="i" label="input pdb-file" optional="false" type="data" format="pdb"/>
        <param name="bc" label="ignore broken chains" optional="true" type="boolean" truevalue="true" falsevalue=""/>
    </inputs>
    <outputs>
        <data name="o" format="pdf"/>
    </outputs>
    <help>Check a given protein structure for the following errors:

5:b7a89b15646f

<!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.-->
<tool id="proteincheck" name="ProteinCheck" version="0.95">
    <description>quality check for proteins structures</description>
    <command interpreter="bash"><![CDATA[../../ProteinCheck 
#if str( $i ) != ''  and str( $i ) != 'None' :
   -i "$i"
#end if

   -bc
#end if
 | tail -n 5
]]></command>
    <inputs>
        <param name="i" optional="false" label="input pdb-file" type="data" format="pdb"/>
        <param name="bc" optional="true" label="ignore broken chains" type="boolean" truevalue="true" falsevalue=""/>
    </inputs>
    <outputs>
        <data name="o" format="pdf"/>
    </outputs>
    <help>Check a given protein structure for the following errors: