diff CADDSuite-1.0.1/galaxyconfigs/tools/GalaxyConfigGenerator.xml @ 9:2cff9609f2c7

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/CADDSuite-1.0.1/galaxyconfigs/tools/GalaxyConfigGenerator.xml	Tue Nov 15 10:40:26 2011 -0500
@@ -0,0 +1,30 @@
+
+<!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.-->
+<tool id="galaxyconfiggenerator" name="GalaxyConfigGenerator" version="1.0.1">
+    <description>generate galaxy tool-config files</description>
+    <command interpreter="bash"><![CDATA[../../GalaxyConfigGenerator 
+#if str( $i ) != ''  and str( $i ) != 'None' :
+   -i "$i"
+#end if
+#if str( $o ) != ''  and str( $o ) != 'None' :
+   -o "$o"
+#end if
+#if str( $ignore ) != ''  and str( $ignore ) != 'None' :
+   -ignore "$ignore"
+#end if
+#if str( $s ) != ''  and str( $s ) != 'None' :
+   -s "$s"
+#end if
+ | tail -n 5
+]]></command>
+    <inputs>
+        <param name="i" optional="false" label="input par-file" type="data" format="data"/>
+        <param name="ignore" optional="true" label="Optional: tool-parameter to be ignored, i.e. those for which no galaxy config entry should be created" area="true" size="1x5"/>
+    </inputs>
+    <outputs>
+        <data name="o" format="xml"/>
+        <data name="s" format="data"/>
+    </outputs>
+    <help>This tool can be used to create galaxy tool-configuration files.
+As input, please supply a parameter-file as written by '-write_par' by all of our tools.</help>
+</tool>
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