diff CADDSuite-1.5/galaxyconfigs/tools/PDBDownload.xml @ 15:ac342506cd4e draft

CADDSuite version 1.5

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/CADDSuite-1.5/galaxyconfigs/tools/PDBDownload.xml	Tue Jul 24 11:08:49 2012 -0400
@@ -0,0 +1,25 @@
+
+<!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.-->
+<tool id="pdbdownload" name="PDBDownload" version="1.5">
+    <description>retrieve pdb-file from pdb.org</description>
+    <command interpreter="bash"><![CDATA[../../PDBDownload 
+#if str( $id ) != ''  and str( $id ) != 'None' :
+   -id "$id"
+#end if
+#if str( $o ) != ''  and str( $o ) != 'None' :
+   -o "$o"
+#end if
+#if str( $p ) != ''  and str( $p ) != 'None' :
+   -p "$p"
+#end if
+ | tail -n 5
+]]></command>
+    <inputs>
+        <param name="id" optional="false" label="PDB ID for desired structure" area="true" type="text" size="1x15"/>
+        <param name="p" optional="true" label="Optional: proxy" area="true" type="text" size="1x15"/>
+    </inputs>
+    <outputs>
+        <data name="o" format="pdb"/>
+    </outputs>
+    <help>Download a pdb-file from the pdb data bank (http://www.pdb.org/) using the specified ID of the desired protein structure.</help>
+</tool>
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