Mercurial > repos > marcel > caddsuite_linux_x86_64
diff CADDSuite/galaxyconfigs/tools/PDBCutter.xml @ 5:b7a89b15646f
Uploaded
| author | marcel |
|---|---|
| date | Tue, 12 Jul 2011 10:23:33 -0400 |
| parents | ff6df146c0d5 |
| children |
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--- a/CADDSuite/galaxyconfigs/tools/PDBCutter.xml Tue Jun 28 10:37:20 2011 -0400 +++ b/CADDSuite/galaxyconfigs/tools/PDBCutter.xml Tue Jul 12 10:23:33 2011 -0400 @@ -1,6 +1,6 @@ <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.--> -<tool id="pdbcutter" name="PDBCutter" version="0.94"> +<tool id="pdbcutter" name="PDBCutter" version="0.95"> <description>separate ligand and receptor</description> <command interpreter="bash"><![CDATA[../../PDBCutter #if str( $i ) != '' and str( $i ) != 'None' : @@ -27,11 +27,11 @@ | tail -n 5 ]]></command> <inputs> - <param name="i" label="input pdb-file" optional="false" type="data" format="pdb"/> - <param name="lig_chain" label="chain-name of ligand" optional="false" area="true" type="text" size="1x15"/> - <param name="lig_name" label="ligand name" optional="false" area="true" type="text" size="1x15"/> - <param name="rm_ch" label="protein chains that are to be deleted" optional="true" area="true" type="text" size="1x15"/> - <param name="rm_res" label="pdb-residues that are to be deleted (e.g. water or ions)" optional="true" area="true" type="text" size="1x15"/> + <param name="i" optional="false" label="input pdb-file" type="data" format="pdb"/> + <param name="lig_chain" optional="false" label="chain-name of ligand" area="true" type="text" size="1x15"/> + <param name="lig_name" optional="false" label="ligand name" area="true" type="text" size="1x15"/> + <param name="rm_ch" optional="true" label="Optional: protein chains that are to be deleted" area="true" type="text" size="1x15"/> + <param name="rm_res" optional="true" label="Optional: pdb-residues that are to be deleted (e.g. water or ions)" area="true" type="text" size="1x15"/> </inputs> <outputs> <data name="rec" format="pdb"/>