diff CADDSuite/galaxyconfigs/tools/ScoreAnalyzer.xml @ 5:b7a89b15646f

Uploaded

--- a/CADDSuite/galaxyconfigs/tools/ScoreAnalyzer.xml	Tue Jun 28 10:37:20 2011 -0400
+++ b/CADDSuite/galaxyconfigs/tools/ScoreAnalyzer.xml	Tue Jul 12 10:23:33 2011 -0400
@@ -1,6 +1,6 @@
 
 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.-->
-<tool id="scoreanalyzer" name="ScoreAnalyzer" version="0.94">
+<tool id="scoreanalyzer" name="ScoreAnalyzer" version="0.95">
     <description>generate ROC or enrichment plots</description>
     <command interpreter="bash"><![CDATA[../../ScoreAnalyzer 
 #if str( $mode ) != ''  and str( $mode ) != 'None' :
@@ -30,18 +30,18 @@
  | tail -n 5
 ]]></command>
     <inputs>
-        <param name="i" label="input file" optional="false" type="data" format="mol2/sdf/drf"/>
-        <param name="mode" label="'roc', 'top50', 'scatter' or 'enrichment'" optional="false" type="select">
+        <param name="i" optional="false" label="input file" type="data" format="mol2/sdf/drf"/>
+        <param name="mode" optional="false" label="'roc', 'top50', 'scatter' or 'enrichment'" type="select">
             <option value="roc">roc</option>
             <option value="top50">top50</option>
             <option value="scatter">scatter</option>
             <option value="enrichment">enrichment</option>
         </param>
-        <param name="title" label="plot title" optional="true" area="true" type="text" size="1x15"/>
-        <param name="s" label="score label" optional="false" area="true" type="text" size="1x15" value="score"/>
-        <param name="e" label="binding-free-energy/class label name" optional="false" area="true" type="text" size="1x15" value="binding_free_energy"/>
-        <param name="t" label="only in case of non-binary act. data: binding-free-energy threshold; compound with values *below* this threshold will be defined as binder" optional="true" area="true" type="text" size="1x15"/>
-        <param name="b" label="binary experimental activity data" optional="true" type="boolean" truevalue="true" falsevalue=""/>
+        <param name="title" optional="true" label="Optional: plot title" area="true" type="text" size="1x15"/>
+        <param name="s" optional="false" label="score label" area="true" type="text" size="1x15" value="score"/>
+        <param name="e" optional="false" label="binding-free-energy/class label name" area="true" type="text" size="1x15" value="binding_free_energy"/>
+        <param name="t" optional="true" label="Optional: only in case of non-binary act. data: binding-free-energy threshold; compound with values *below* this threshold will be defined as binder" area="true" type="text" size="1x15"/>
+        <param name="b" optional="true" label="binary experimental activity data" type="boolean" truevalue="true" falsevalue=""/>
     </inputs>
     <outputs>
         <data name="o" format="png"/>