comparison CADDSuite-1.6/galaxyconfigs/tools/PDBDownload.xml @ 8:dbb480e39d95 draft

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author marcel
date Sat, 15 Dec 2012 13:15:46 -0500
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7:bfab27640f5e 8:dbb480e39d95
1
2 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.-->
3 <tool id="pdbdownload" name="PDBDownload" version="1.6">
4 <description>retrieve pdb-file from pdb.org</description>
5 <command interpreter="bash"><![CDATA[../../PDBDownload
6 #if str( $id ) != '' and str( $id ) != 'None' :
7 -id "$id"
8 #end if
9 #if str( $o ) != '' and str( $o ) != 'None' :
10 -o "$o"
11 #end if
12 #if str( $p ) != '' and str( $p ) != 'None' :
13 -p "$p"
14 #end if
15 | tail -n 5
16 ]]></command>
17 <inputs>
18 <param name="id" optional="false" label="PDB ID for desired structure" area="true" type="text" size="1x15"/>
19 <param name="p" optional="true" label="Optional: proxy" area="true" type="text" size="1x15"/>
20 </inputs>
21 <outputs>
22 <data name="o" format="pdb"/>
23 </outputs>
24 <help>Download a pdb-file from the pdb data bank (http://www.pdb.org/) using the specified ID of the desired protein structure.</help>
25 </tool>