diff CADDSuite-1.6/galaxyconfigs/tool_conf.xml @ 10:eda78e0f5df6 draft default tip

Deleted selected files

--- a/CADDSuite-1.6/galaxyconfigs/tool_conf.xml	Sat Dec 15 13:16:40 2012 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,78 +0,0 @@
-<?xml version="1.0"?>
-<toolbox>
-  <label text="CADDSuite 1.6" id="cadds" />
-
-  <section name="Get Data" id="getext">
-    <tool file="CADDSuite/galaxyconfigs/tools/upload.xml"/>
-    <tool file="CADDSuite/galaxyconfigs/tools/CombiLibGenerator.xml"/>
-    <tool file="CADDSuite/galaxyconfigs/tools/PDBDownload.xml"/>
-    <tool file="CADDSuite/galaxyconfigs/tools/DBExporter.xml"/>
-  </section>
-
-  <section name="Data preparation" id="dataPrep">
-	<tool file="CADDSuite/galaxyconfigs/tools/PDBCutter.xml" />
-	<tool file="CADDSuite/galaxyconfigs/tools/ProteinProtonator.xml" />
-	<tool file="CADDSuite/galaxyconfigs/tools/Ligand3DGenerator.xml" />
-	<tool file="CADDSuite/galaxyconfigs/tools/LigandFileSplitter.xml" />
-   <tool file="CADDSuite/galaxyconfigs/tools/BindingDBCleaner.xml"/>
-   <tool file="CADDSuite/galaxyconfigs/tools/EvenSplit.xml"/>
-   <tool file="CADDSuite/galaxyconfigs/tools/PropertyModifier.xml"/>
-   <tool file="CADDSuite/galaxyconfigs/tools/MolFilter.xml"/>
-  </section>
-
-  <section name="Checks and evaluations" id="checks">
-	<tool file="CADDSuite/galaxyconfigs/tools/ProteinCheck.xml" />
-	<tool file="CADDSuite/galaxyconfigs/tools/LigCheck.xml" />
-  </section>
-
-	<section name="QSAR" id="queasy">
-		<tool file="CADDSuite/galaxyconfigs/tools/InputReader.xml" />
-		<tool file="CADDSuite/galaxyconfigs/tools/ModelCreator.xml" />
-		<tool file="CADDSuite/galaxyconfigs/tools/FeatureSelector.xml" />
-		<tool file="CADDSuite/galaxyconfigs/tools/Validator.xml" />
-		<tool file="CADDSuite/galaxyconfigs/tools/MolPredictor.xml" />
-		<tool file="CADDSuite/galaxyconfigs/tools/AutoModel.xml" />
-	</section>
-
-  <section name="Docking" id="dockingTools">
-	 <tool file="CADDSuite/galaxyconfigs/tools/WaterFinder.xml" />
-	 <tool file="CADDSuite/galaxyconfigs/tools/SpatialConstraintDefiner.xml" />
-	 <tool file="CADDSuite/galaxyconfigs/tools/InteractionConstraintDefiner.xml" />
-	 <tool file="CADDSuite/galaxyconfigs/tools/ConstraintsFinder.xml"/>
-	 <tool file="CADDSuite/galaxyconfigs/tools/PocketDetector.xml"/>
-    <tool file="CADDSuite/galaxyconfigs/tools/GridBuilder.xml" />
-    <tool file="CADDSuite/galaxyconfigs/tools/IMGDock.xml" />
-  </section>
-
-  <section name="Rescoring" id="rescoringsection">
-	<tool file="CADDSuite/galaxyconfigs/tools/SimpleRescorer.xml"/>
-	<tool file="CADDSuite/galaxyconfigs/tools/TaGRes-train.xml"/>
-	<tool file="CADDSuite/galaxyconfigs/tools/TaGRes.xml"/>
-	<tool file="CADDSuite/galaxyconfigs/tools/PocketCutter.xml"/>
-	<tool file="CADDSuite/galaxyconfigs/tools/SurfaceMatcher.xml" />
-	<tool file="CADDSuite/galaxyconfigs/tools/AntitargetRescorer.xml" />
-  </section>
-
-   <section name="Off-target search" id="offtargets">
-	<tool file="CADDSuite/galaxyconfigs/tools/PocketCutter.xml"/>
-	<tool file="CADDSuite/galaxyconfigs/tools/SurfaceMatcher.xml" />
-  </section>
-
-	<section name="Analysis" id="analysis">
-		<tool file="CADDSuite/galaxyconfigs/tools/ScoreAnalyzer.xml"/>
-		<tool file="CADDSuite/galaxyconfigs/tools/SimilarityAnalyzer.xml"/>
-		<tool file="CADDSuite/galaxyconfigs/tools/PropertyPlotter.xml"/>
-		<tool file="CADDSuite/galaxyconfigs/tools/RMSDCalculator.xml"/>
-	</section>
-
-	<section name="Convert, combine and store" id="storeData">
-		<tool file="CADDSuite/galaxyconfigs/tools/Converter.xml" />
-		<tool file="CADDSuite/galaxyconfigs/tools/MolCombine.xml" />
-		<tool file="CADDSuite/galaxyconfigs/tools/DockResultMerger.xml"/>
-		<tool file="CADDSuite/galaxyconfigs/tools/Filter.xml"/>
-		<tool file="CADDSuite/galaxyconfigs/tools/MolDepict.xml" />
-		<tool file="CADDSuite/galaxyconfigs/tools/DBImporter.xml" />
-		<tool file="CADDSuite/galaxyconfigs/tools/VendorFinder.xml" />
-	</section>
-
-</toolbox>