view CADDSuite/galaxyconfigs/tools/PDBDownload.xml @ 4:af446ca2d5c6

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<!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.-->
<tool id="pdbdownload" name="PDBDownload" version="0.9.6">
    <description>retrieve pdb-file from pdb.org</description>
    <command interpreter="bash"><![CDATA[../../PDBDownload 
#if str( $id ) != ''  and str( $id ) != 'None' :
   -id "$id"
#end if
#if str( $o ) != ''  and str( $o ) != 'None' :
   -o "$o"
#end if
#if str( $p ) != ''  and str( $p ) != 'None' :
   -p "$p"
#end if
 | tail -n 5
]]></command>
    <inputs>
        <param name="id" optional="false" label="PDB ID for desired structure" area="true" type="text" size="1x15"/>
        <param name="p" optional="true" label="Optional: proxy" area="true" type="text" size="1x15"/>
    </inputs>
    <outputs>
        <data name="o" format="pdb"/>
    </outputs>
    <help>Download a pdb-file from the pdb data bank (http://www.pdb.org/) using the specified ID of the desired protein structure.</help>
</tool>