view CADDSuite/galaxyconfigs/tools/PDBDownload.xml @ 4:af446ca2d5c6

author marcel
date Fri, 02 Sep 2011 08:54:17 -0400
parents bb26168c5715
line wrap: on
line source

<!--This is a configuration file for the integration of a CADDSuite tool into Galaxy ( This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.-->
<tool id="pdbdownload" name="PDBDownload" version="0.9.6">
    <description>retrieve pdb-file from</description>
    <command interpreter="bash"><![CDATA[../../PDBDownload 
#if str( $id ) != ''  and str( $id ) != 'None' :
   -id "$id"
#end if
#if str( $o ) != ''  and str( $o ) != 'None' :
   -o "$o"
#end if
#if str( $p ) != ''  and str( $p ) != 'None' :
   -p "$p"
#end if
 | tail -n 5
        <param name="id" optional="false" label="PDB ID for desired structure" area="true" type="text" size="1x15"/>
        <param name="p" optional="true" label="Optional: proxy" area="true" type="text" size="1x15"/>
        <data name="o" format="pdb"/>
    <help>Download a pdb-file from the pdb data bank ( using the specified ID of the desired protein structure.</help>