view CADDSuite/changelog.txt @ 3:bb26168c5715

Uploaded

Version 0.95, 07-12-2011:
	- Let rescoring search for correct LigCheck molecule property-tags
	- Indicate optional parameters in galaxy interface
	- Fixed compilation with disabled QuEasyViz
	- Added missing gnuplot data file to release archive
	- Set some default values for flags for use in GUIs
	- Clarified EvenSplit docu

Version 0.94, 06-27-2011:
	- Fixed tool-startup script for pathes containing whitespaces
	- New tool SpatialConstraintDefiner
	- New tool InteractionConstraintDefiner
	- Removed superficial pathes from startup-script
	- Slight change in ParamFile format (i.e. the files written with -write_par)
	- Renamed IMeedyDock to IMGDock

Version 0.93, 05-30-2011:
	- Split Rescorer into 3 tools: SimpleRescorer, TaGRes-train, TaGRes (Target-Specific Grid-Rescoring)
	- Allow to optionally specify output filenames to LigandFileSplitter
	- Fixed creation of galaxy-scripts for tools with inputfile-lists
	- Fixed creation of galaxy-scripts for Converter and DockResultMerger
	- Automatically create and add all files necessary for integration of CADDSuite into Galaxy to the makeself archive
	- New tool MolFilter
	- Fixed some gnuplot issues
	- Added PDBDownload tool
	- Slight change of format of ParamFile
	- Added some missing tool-manuals
	- Disable B-factor check for hydrogens in ProteinCheck
	- Added safeguards to several tools
	- Automatically delete existing hydrogens from BALL-system before protonation is done by ProteinProtonator
	- Fixed reading of mulitple ScoreGridSets (for cases when no ini-file is used)
	- Simplified use of VendorFinder by allowing to set all db-parameters on the command-line (instead of using ini-file)
	- Enhanced several tool manuals
	- Let tools register their category (e.g. Preparation, Docking, etc.). Write and read information about this category to/from ParamFiles.

Version 0.92, 05-17-2011:
	- Speed-up of ob-mol generation
	- Support build on Windows
	- ProteinCheck now generates protein-quality report as pdf
	- Added info about mandatory parameters and parameter-restrictions to parameter xml-file
	- Simplified use of DBImporter+DBExporter by allowing to set all db-parameters on the command-line (instead of using ini-file)
	- Simplified use of some other tools by merging several flags into one string-parameter that has restrictions.
	- New tool MolDepict. It generates structure diagrams for small molecules by using openbabel's svg-writer and merges them to one pdf-file (3 on 5).
	- Allow to create makeself-archive containing CADDSuite, all necessary contrib-libs, data-files and install-script
	- Write information about supported file-formats to parameter xml-file
	- new tool ProteinProtonator
	- new tool Ligand3DGenerator
	- new tool GalaxyConfigGenerator
	- allow to open file that do not have an extension (by searching for format-specific keywords)

Version 0.91, 04-12-2011:
	- All tools now write a manual text to cout as well as to parameter xml-file (as generated by 'write_par)

Version 0.9