view CADDSuite-1.0.1/galaxyconfigs/tools/GalaxyConfigGenerator.xml @ 5:e30a41af9d2b

author marcel
date Tue, 15 Nov 2011 10:53:16 -0500
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<!--This is a configuration file for the integration of a CADDSuite tool into Galaxy ( This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.-->
<tool id="galaxyconfiggenerator" name="GalaxyConfigGenerator" version="1.0.1">
    <description>generate galaxy tool-config files</description>
    <command interpreter="bash"><![CDATA[../../GalaxyConfigGenerator 
#if str( $i ) != ''  and str( $i ) != 'None' :
   -i "$i"
#end if
#if str( $o ) != ''  and str( $o ) != 'None' :
   -o "$o"
#end if
#if str( $ignore ) != ''  and str( $ignore ) != 'None' :
   -ignore "$ignore"
#end if
#if str( $s ) != ''  and str( $s ) != 'None' :
   -s "$s"
#end if
 | tail -n 5
        <param name="i" optional="false" label="input par-file" type="data" format="data"/>
        <param name="ignore" optional="true" label="Optional: tool-parameter to be ignored, i.e. those for which no galaxy config entry should be created" area="true" size="1x5"/>
        <data name="o" format="xml"/>
        <data name="s" format="data"/>
    <help>This tool can be used to create galaxy tool-configuration files.
As input, please supply a parameter-file as written by '-write_par' by all of our tools.</help>