diff IMGDock,_unparallelized.ga @ 1:e047a2629ecf

Uploaded
author marcel
date Thu, 19 Jan 2012 11:33:05 -0500
parents
children 39def4dc6718
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/IMGDock,_unparallelized.ga	Thu Jan 19 11:33:05 2012 -0500
@@ -0,0 +1,223 @@
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