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author marie-tremblay-metatoul
date Mon, 23 Dec 2019 09:26:20 -0500
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1 Bidimensional NMR annotation for Galaxy
2 =======================================
3
4 [![bioconda-badge](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io) [![Build Status](https://travis-ci.org/workflow4metabolomics/2DNmrAnnotation.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/2DNmrAnnotation)
5
6 Our project
7 -----------
8 The [Workflow4Metabolomics](http://workflow4metabolomics.org), W4M in short, is a French infrastructure offering software tool processing, analyzing and annotating metabolomics data. It is based on the Galaxy platform.
9
10
11 BARSA
12 -----
13
14 Algorithm for Bidimensional NMR Spectra Annotation
15
16 Galaxy
17 ------
18 Galaxy is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.
19
20 Homepage: [https://galaxyproject.org/](https://galaxyproject.org/)
21
22
23 Dependencies using Conda
24 ------------------------
25 [![bioconda-badge](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io)
26
27 The main recipe: [https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-ptw](https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-ptw)
28
29 ```
30 #To install miniconda2
31 #http://conda.pydata.org/miniconda.html
32 #To install the needed R library using conda:
33 conda install r-batch r-dplyr r-ggplot2 r-openxlsx r-stringr r-tidyr
34
35 #To set an environment:
36 conda create -n 2DNmrAnnotation r-dplyr r-ggplot2 r-openxlsx r-stringr r-tidyr
37
38 #To activate the environment:
39 . activate 2DNmrAnnotation
40 ```
41
42 [Conda](http://conda.pydata.org/) is package manager that among many other things can be used to manage Python packages.
43
44 Travis
45 ------
46 [![Build Status](https://travis-ci.org/workflow4metabolomics/2DNmrAnnotation.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/2DNmrAnnotation)
47
48 Test and Deploy with Confidence. Easily sync your GitHub projects with Travis CI and you'll be testing your code in minutes!
49
50 Historic contributors
51 ---------------------
52 - Marie Tremblay-Franco @mtremblayfr - [French Metabolomics and Fluxomics Infrastructure (MetaboHUB)](http://www.metabohub.fr/en) - [MetaToul](http://www.metatoul.fr/)
53 - Coline Gardou
54