Mercurial > repos > marie-tremblay-metatoul > 2dnmrannotation
diff test-data/2DNMR_Annotation_log.txt @ 2:dff7bde22102 draft
"planemo upload for repository https://github.com/workflow4metabolomics/tools-metabolomics commit b3abcb650e9b38458aa0ac5f7d838811d982ff65"
author | workflow4metabolomics |
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date | Tue, 04 Feb 2020 10:59:26 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/2DNMR_Annotation_log.txt Tue Feb 04 10:59:26 2020 -0500 @@ -0,0 +1,112 @@ + PACKAGE INFO +R version 3.4.3 (2017-11-30) +Platform: x86_64-pc-linux-gnu (64-bit) +Running under: Ubuntu 14.04.5 LTS + +Matrix products: default +BLAS: /usr/lib/libblas/libblas.so.3.0 +LAPACK: /usr/lib/lapack/liblapack.so.3.0 + +locale: + [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C + [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 + [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 + [7] LC_PAPER=en_US.UTF-8 LC_NAME=C + [9] LC_ADDRESS=C LC_TELEPHONE=C +[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C + +attached base packages: +[1] stats graphics grDevices utils datasets base + +other attached packages: +[1] tidyr_0.7.2 stringr_1.2.0 openxlsx_4.1.3 ggplot2_2.2.1 dplyr_0.7.4 +[6] batch_1.1-4 + +loaded via a namespace (and not attached): + [1] Rcpp_0.12.14 bindr_0.1 magrittr_1.5 munsell_0.4.3 + [5] colorspace_1.3-2 R6_2.2.2 rlang_0.4.2 plyr_1.8.4 + [9] tools_3.4.3 grid_3.4.3 gtable_0.2.0 cli_1.1.0 +[13] lazyeval_0.2.1 assertthat_0.2.0 tibble_1.3.4 crayon_1.3.4 +[17] bindrcpp_0.2 zip_1.0.0 purrr_0.3.3 glue_1.2.0 +[21] stringi_1.1.6 compiler_3.4.3 methods_3.4.3 scales_0.5.0 +[25] pkgconfig_2.0.1 +$xlsfile +[1] "/home/vagrant/galaxy/database/datasets/001/dataset_1825.dat" + +$cosy_2dsequences +[1] "no" + +$jres_2dsequences +[1] "yes" + +$hmbc_2dsequences +[1] "no" + +$hsqc_2dsequences +[1] "yes" + +$tocsy_2dsequences +[1] "no" + +$inHouse_DB_choices.choice +[1] "no" + +$tolppm1 +[1] 0.01 + +$tolppm2 +[1] 0.5 + +$tolppmJRES +[1] 0.002 + +$threshold +[1] 0.3 + +$unicity +[1] "no" + +$logOut +[1] "/home/vagrant/galaxy/database/datasets/002/dataset_2767.dat" + +$annotationCOSY +[1] "None" + +$ppmCommunCOSY +[1] "None" + +$annotationJRES +[1] "/home/vagrant/galaxy/database/datasets/002/dataset_2768.dat" + +$ppmCommunJRES +[1] "/home/vagrant/galaxy/database/datasets/002/dataset_2769.dat" + +$annotationHMBC +[1] "None" + +$ppmCommunHMBC +[1] "None" + +$annotationHSQC +[1] "/home/vagrant/galaxy/database/datasets/002/dataset_2770.dat" + +$ppmCommunHSQC +[1] "/home/vagrant/galaxy/database/datasets/002/dataset_2771.dat" + +$annotationTOCSY +[1] "None" + +$ppmCommunTOCSY +[1] "None" + +$annotationCombination +[1] "/home/vagrant/galaxy/database/datasets/002/dataset_2772.dat" + +$AnnotationGraph +[1] "/home/vagrant/galaxy/database/datasets/002/dataset_2773.dat" + +null device + 1 +Time difference of 1.566586 mins + +End of '2D NMR annotation' Galaxy module call: 2019-12-23 10:55:29 \ No newline at end of file