Mercurial > repos > marie-tremblay-metatoul > nmr_preprocessing
comparison macros.xml @ 2:5e64657b4fe5 draft
planemo upload for repository https://github.com/workflow4metabolomics/nmr_preprocessing commit 22ca8782d7c4c0211e13c95b425d4f29f53f995e
author | lecorguille |
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date | Wed, 28 Mar 2018 08:05:12 -0400 |
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1:cbea5e9fd0b4 | 2:5e64657b4fe5 |
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1 <?xml version="1.0"?> | |
2 <macros> | |
3 <token name="@WRAPPER_VERSION@">3.2.0</token> | |
4 | |
5 <xml name="requirements"> | |
6 <requirements> | |
7 <requirement type="package" version="1.1_4">r-batch</requirement> | |
8 <requirement type="package" version="2.2.1">r-ggplot2</requirement> | |
9 <requirement type="package" version="2.3">r-gridextra</requirement> | |
10 <requirement type="package" version="1.4.3">r-reshape2</requirement> | |
11 <yield /> | |
12 </requirements> | |
13 </xml> | |
14 | |
15 <xml name="stdio"> | |
16 <stdio> | |
17 <exit_code range="1" level="fatal" /> | |
18 </stdio> | |
19 </xml> | |
20 | |
21 | |
22 <token name="@HELP_AUTHORS@"> | |
23 .. class:: infomark | |
24 | |
25 **Authors** Manon Martin (manon.martin@uclouvain.be) and Marie Tremblay-Franco (marie.tremblay-franco@inra.fr; Galaxy integration) | |
26 | |
27 .. class:: infomark | |
28 | |
29 | Contact support@workflow4metabolomics.org for any questions or concerns about the Galaxy implementation of this tool. | |
30 | |
31 --------------------------------------------------- | |
32 | |
33 </token> | |
34 | |
35 <token name="@HELP_CHANGELOG@"> | |
36 | |
37 --------------------------------------------------- | |
38 | |
39 Changelog/News | |
40 -------------- | |
41 **Version 3.2.0** | |
42 | |
43 * Updated R scripts and the help section of NMR_ReadFids and NMR_preprocessing | |
44 * Added sections | |
45 * Created a variableMetadata file in output of the NMR_preprocessing module | |
46 * Homogenised the input-output file names with the other modules | |
47 * Suppressed the option ptw for the baseline correction, set to TRUE all the time now | |
48 * Shift referencing: other values than 0 are admitted | |
49 * The log file recovers the input/output parameters | |
50 * Added an exclusion zone for the computation of the Baseline Correction criterion | |
51 * Switched Internal Referencing (goes second) and Zero Order Phase Correction (goes first) | |
52 | |
53 **Version 3.1.0** | |
54 | |
55 * Implementation of NMR_ReadFids and NMR_preprocessing | |
56 | |
57 </token> | |
58 | |
59 <xml name="citation"> | |
60 <citations> | |
61 <citation type="bibtex">@PhDThesis{Rousseau2011, | |
62 title = {Statistical contribution to the analysis of metabonomics data in $^1$H NMR spectroscopy}, | |
63 author = {Rousseau, R.}, | |
64 school = {Institut de Statistique, Biostatistique et Sciences Actuarielles, Universit{\'e} catholique de Louvain}, | |
65 year = {2011}} | |
66 </citation> | |
67 <citation type="doi">10.1093/bioinformatics/btu813</citation> | |
68 </citations> | |
69 </xml> | |
70 | |
71 </macros> |