Mercurial > repos > marie-tremblay-metatoul > normalization

comparison test-normalization.sh @ 6:221cbd549c40 draft default tip

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planemo upload for repository https://github.com/workflow4metabolomics/normalization commit 4bbd4d65e954192aff1a4d210001deb625667136
author workflow4metabolomics
date Tue, 30 Jul 2019 09:43:57 -0400
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5:3d00a98974b7 6:221cbd549c40
1 #!/bin/bash
2
3 # Variables
4 script_dir="${0%/*}"
5 normalization_script=$script_dir/galaxy/normalization/NmrNormalization_wrapper.R
6 data_dir=$script_dir/galaxy/normalization/test-data
7
8 # Run script
9 Rscript $normalization_script dataMatrix $data_dir/MTBLS1_bucketedData.tabular scalingMethod Total graphType Overlay logOut norm.log dataMatrixOut $script_dir/matrixout.tabular || exit 1
10
11 # Test output file
12 diff $data_dir/MTBLS1_bucketedData_normalized.tabular $script_dir/matrixout.tabular || exit 2