Mercurial > repos > marie-tremblay-metatoul > normalization
comparison NmrNormalization_xml.xml @ 6:221cbd549c40 draft default tip
planemo upload for repository https://github.com/workflow4metabolomics/normalization commit 4bbd4d65e954192aff1a4d210001deb625667136
| author | workflow4metabolomics |
|---|---|
| date | Tue, 30 Jul 2019 09:43:57 -0400 |
| parents | 3d00a98974b7 |
| children |
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| 5:3d00a98974b7 | 6:221cbd549c40 |
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| 1 <tool id="normalization" name="Normalization" version="1.0.6"> | 1 <tool id="normalization" name="Normalization" version="1.0.7"> |
| 2 | 2 |
| 3 <description> Normalization of (preprocessed) spectra </description> | 3 <description> Normalization of (preprocessed) spectra </description> |
| 4 | 4 |
| 5 <requirements> | 5 <requirements> |
| 6 <requirement type="package" version="1.1_4">r-batch</requirement> | 6 <requirement type="package" version="1.1_4">r-batch</requirement> |
| 84 </data> | 84 </data> |
| 85 </outputs> | 85 </outputs> |
| 86 | 86 |
| 87 <tests> | 87 <tests> |
| 88 <test> | 88 <test> |
| 89 <param name="dataMatrix" value="MTBLS1_bucketedData.tabular" ftype="tabular" /> | 89 <param name="dataMatrix" value="MTBLS1_bucketedData.tabular.tsv" ftype="tabular" /> |
| 90 <conditional name="scalingMethod" > | 90 <conditional name="scalingMethod" > |
| 91 <param name="method" value="Total" /> | 91 <param name="method" value="Total" /> |
| 92 </conditional> | 92 </conditional> |
| 93 <param name="graphType" value="Overlay" /> | 93 <param name="graphType" value="Overlay" /> |
| 94 <output name="dataMatrixOut" file="MTBLS1_bucketedData_normalized.tabular" /> | 94 <output name="dataMatrixOut" file="MTBLS1_bucketedData_normalized.tabular" /> |
| 97 | 97 |
| 98 <help> | 98 <help> |
| 99 | 99 |
| 100 .. class:: infomark | 100 .. class:: infomark |
| 101 | 101 |
| 102 **Authors** Marie Tremblay-Franco (marie.tremblay-franco@toulouse.inra.fr) and Marion Landi (marion.landi@clermont.inra.fr) | 102 **Authors** Marie Tremblay-Franco (marie.tremblay-franco@inra.fr) and Marion Landi (marion.landi@clermont.inra.fr) |
| 103 MetaboHUB: The French National Infrastructure for Metabolomics and Fluxomics (http://www.metabohub.fr/en) | 103 MetaboHUB: The French National Infrastructure for Metabolomics and Fluxomics (https://www.metabohub.fr/home.html) |
| 104 | 104 |
| 105 --------------------------------------------------- | 105 --------------------------------------------------- |
| 106 | 106 |
| 107 .. class:: infomark | 107 .. class:: infomark |
| 108 | 108 |
| 238 --------------------------------------------------- | 238 --------------------------------------------------- |
| 239 | 239 |
| 240 -------------- | 240 -------------- |
| 241 Changelog/News | 241 Changelog/News |
| 242 -------------- | 242 -------------- |
| 243 **Version 1.0.7 - 25/09/2018** | |
| 244 | |
| 245 - Bug fixing for PQN normalization in case of zero's | |
| 243 | 246 |
| 244 **Version 1.0.3 - 30/01/2017** | 247 **Version 1.0.3 - 30/01/2017** |
| 245 | 248 |
| 246 - BUGFIX: Fix a bug: stack overflow for integers | 249 - BUGFIX: Fix a bug: stack overflow for integers |
| 247 | 250 |
| 248 **Version 1.0.2 - 22/10/2016** | 251 **Version 1.0.2 - 22/10/2016** |
| 249 | 252 |
| 250 - NEW: this tool was previously named NMR Normalization. It had been generalize to deal with all kind of preprocessed data | 253 - NEW: this tool was previously named NMR Normalization. It had been generalize to deal with all kind of preprocessed data |
| 251 | 254 |
| 252 **Version 1.0.1 - 14/04/2016** | 255 **Version 1.0.1 - 14/04/2016** |