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view tools/rdock/data/sf/RbtSolvGridSF.prm @ 0:bc03dbb6eb37 draft
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author | marpiech |
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date | Mon, 29 Aug 2016 03:38:13 -0400 |
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RBT_PARAMETER_FILE_V1.00 TITLE Intermolecular scoring function (with SOLVATION, grid-based VDW) VERSION $Id: //depot/dev/client3/rdock/2013.1/data/sf/RbtSolvGridSF.prm#3 $ ################################################################################ # Constant scoring function # Represents loss of translation, rotational entropy of ligand SECTION CONST SCORING_FUNCTION RbtConstSF WEIGHT +5.4 END_SECTION ################################################################################ # Rotational scoring function # Represents loss of torsional entropy of ligand SECTION ROT SCORING_FUNCTION RbtRotSF WEIGHT +1.0 END_SECTION ################################################################################ # Pseudo SFs for setting up atomic attributes for polar and lipo atoms SECTION SETUP_POLAR SCORING_FUNCTION RbtSetupPolarSF RADIUS 5.0 NORM 25 POWER 0.5 CHGFACTOR 0.5 GUANFACTOR 0.5 END_SECTION ################################################################################ # Hydrogen-bond scoring function (also Metal-acceptor, C.cat - acceptor) SECTION POLAR SCORING_FUNCTION RbtPolarIdxSF WEIGHT 5.0 R12FACTOR 1.0 R12INCR 0.05 DR12MIN 0.25 DR12MAX 0.6 A1 180.0 DA1MIN 30.0 DA1MAX 80.0 A2 180.0 DA2MIN 60.0 DA2MAX 100.0 INCMETAL TRUE INCHBD TRUE INCHBA TRUE INCGUAN TRUE GUAN_PLANE TRUE ABS_DR12 TRUE GRIDSTEP 0.5 RANGE 4.41 INCR 2.46 ATTR TRUE LP_OSP2 TRUE LP_PHI 45 LP_DPHIMIN 15 LP_DPHIMAX 30 LP_DTHETAMIN 20 LP_DTHETAMAX 60 END_SECTION ################################################################################ # # VDW SCORING FUNCTIONS # Two precalculated grids are loaded with different values of ECUT # Each is initially disabled # We also load an indexed-grid version which is enabled # SECTION VDW1 SCORING_FUNCTION RbtVdwGridSF WEIGHT 1.5 GRID _vdw1.grd SMOOTHED FALSE ENABLED FALSE END_SECTION SECTION VDW5 SCORING_FUNCTION RbtVdwGridSF WEIGHT 1.5 GRID _vdw5.grd SMOOTHED FALSE ENABLED FALSE END_SECTION SECTION VDW SCORING_FUNCTION RbtVdwIdxSF WEIGHT 1.5 USE_4_8 FALSE USE_TRIPOS FALSE RMAX 1.5 ECUT 120.0 E0 1.5 END_SECTION ################################################################################ # Desolvation scoring function SECTION SOLV SCORING_FUNCTION RbtSAIdxSF WEIGHT 0.5 GRIDSTEP 0.5 END_SECTION