diff plotheatmap.xml @ 1:ddde82ae5dea draft

planemo upload

--- a/plotheatmap.xml	Fri Dec 09 10:52:35 2016 -0500
+++ b/plotheatmap.xml	Sun Dec 11 18:57:58 2016 -0500
@@ -1,5 +1,5 @@
-<tool id="plotheatmap" name="plotheatmap" version="1.0">
-    <description>Make a count matrix for edgeR</description>
+<tool id="plotheatmap" name="plotHeatmap" version="1.0">
+    <description>Plot heatmap</description>
     <stdio>
         <exit_code range="1:" />
     </stdio>
@@ -7,8 +7,6 @@
         <![CDATA[ 
             $__tool_directory__/tools/script.R $count_matrix $stats_matrix $log_fc $log_cpm $pvalue $fdr > $rscript_log 2> $rerror_log
 
-
-
         ]]>
     </command>
     <inputs>
@@ -21,7 +19,6 @@
 
     </inputs>
     <outputs>
-<!--        <data name="output" format="data" /> --> 
        <data format="pdf" name="haetamappdf" from_work_dir="heatmap.pdf" >
             <filter>(outftype == 'pdf')</filter>
         </data>
@@ -37,7 +34,6 @@
             <param name="log_cpm" value="2"/>
             <param name="pvalue" value="0.05"/>
             <param name="fdr" value="0.1"/>
-<!--             <output name="output" file="done"/> -->
             <output name="haetamappdf" file="heatmap.pdf" ftype="pdf" compare="sim_size" />
             <output name="rscript_log" file="rscript.log"/>
             <output name="rerror_log" file="rerror.log"/>
@@ -47,11 +43,8 @@
     </tests>
     <help>
         <![CDATA[ 
-
-tutaj cos bedzie
      ]]>
     </help>
     <citations>
-        
     </citations>
 </tool>
\ No newline at end of file