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comparison test-data/refseq_parser/test.tsv @ 0:45533fb9d2f4 draft default tip

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author matnguyen
date Tue, 04 Sep 2018 02:49:49 -0400
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-1:000000000000 0:45533fb9d2f4
1 sample top_taxonomy_name distance pvalue matching full_taxonomy taxonomic_species taxonomic_genus taxonomic_family taxonomic_order taxonomic_class taxonomic_phylum taxonomic_superkingdom subspecies serovar plasmid bioproject biosample taxid assembly_accession match_id taxonomic_species group
2 SRR6152717 Mycobacterium tuberculosis TKK_05MA_0040 0.07493939999999999 5.471479999999998e-187 71/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis; TKK_05MA_0040 Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN02586004 1448509 GCF_000653175.1 ./rcn/refseq-NZ-1448509-PRJNA224116-SAMN02586004-GCF_000653175.1-.-Mycobacterium_tuberculosis_TKK_05MA_0040.fna Mycobacterium tuberculosis complex
3 SRR6152717 Mycobacterium tuberculosis MD17647 0.07493939999999999 5.152709999999997e-187 71/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis; MD17647 Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN02584623 1447472 GCF_000650435.1 ./rcn/refseq-NZ-1447472-PRJNA224116-SAMN02584623-GCF_000650435.1-.-Mycobacterium_tuberculosis_MD17647.fna Mycobacterium tuberculosis complex
4 SRR6152717 Mycobacterium tuberculosis MD17646 0.07493939999999999 5.719649999999997e-187 71/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis; MD17646 Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN02584624 1447473 GCF_000706405.1 ./rcn/refseq-NZ-1447473-PRJNA224116-SAMN02584624-GCF_000706405.1-.-Mycobacterium_tuberculosis_MD17646.fna Mycobacterium tuberculosis complex
5 SRR6152717 Mycobacterium tuberculosis MD17240 0.07493939999999999 5.256599999999999e-187 71/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis; MD17240 Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN02584627 1447476 GCF_000650495.1 ./rcn/refseq-NZ-1447476-PRJNA224116-SAMN02584627-GCF_000650495.1-.-Mycobacterium_tuberculosis_MD17240.fna Mycobacterium tuberculosis complex
6 SRR6152717 Mycobacterium tuberculosis MD17749 0.07493939999999999 5.147799999999998e-187 71/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis; MD17749 Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN02584628 1447477 NZ_JLFC ./rcn/refseq-NZ-1447477-PRJNA224116-SAMN02584628-NZ_JLFC-.-Mycobacterium_tuberculosis_MD17749.fna Mycobacterium tuberculosis complex
7 SRR6152731 Mycobacterium tuberculosis UG-D 0.000156838 0.0 398/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis; UG-D Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN02360630 1402483 GCF_000674655.1 ./rcn/refseq-NZ-1402483-PRJNA224116-SAMN02360630-GCF_000674655.1-.-Mycobacterium_tuberculosis_UG_D.fna Mycobacterium tuberculosis complex
8 SRR6152731 Mycobacterium tuberculosis TKK_04_0148 0.000156838 0.0 398/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis; TKK_04_0148 Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN02586095 1448600 GCF_000656935.1 ./rcn/refseq-NZ-1448600-PRJNA224116-SAMN02586095-GCF_000656935.1-.-Mycobacterium_tuberculosis_TKK_04_0148.fna Mycobacterium tuberculosis complex
9 SRR6152731 Mycobacterium tuberculosis UT0058 0.000156838 0.0 398/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis; UT0058 Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN02381013 1408936 GCF_000668595.1 ./rcn/refseq-NZ-1408936-PRJNA224116-SAMN02381013-GCF_000668595.1-.-Mycobacterium_tuberculosis_UT0058.fna Mycobacterium tuberculosis complex
10 SRR6152731 Mycobacterium tuberculosis BTB10-001 0.000156838 0.0 398/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis; BTB10-001 Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN02414929 1423513 GCF_000678695.1 ./rcn/refseq-NZ-1423513-PRJNA224116-SAMN02414929-GCF_000678695.1-.-Mycobacterium_tuberculosis_BTB10_001.fna Mycobacterium tuberculosis complex
11 SRR6152731 Mycobacterium tuberculosis BTB10-142 0.000156838 0.0 398/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis; BTB10-142 Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN02414934 1423518 GCF_000678775.1 ./rcn/refseq-NZ-1423518-PRJNA224116-SAMN02414934-GCF_000678775.1-.-Mycobacterium_tuberculosis_BTB10_142.fna Mycobacterium tuberculosis complex
12 SRR6152844 Mycobacterium tuberculosis XTB13-092 7.82718e-05 0.0 399/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis; XTB13-092 Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN02419542 1427186 GCF_000680035.1 ./rcn/refseq-NZ-1427186-PRJNA224116-SAMN02419542-GCF_000680035.1-.-Mycobacterium_tuberculosis_XTB13_092.fna Mycobacterium tuberculosis complex
13 SRR6152844 Mycobacterium tuberculosis TKK_03_0065 7.82718e-05 0.0 399/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis; TKK_03_0065 Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN02585907 1448412 GCF_000651735.1 ./rcn/refseq-NZ-1448412-PRJNA224116-SAMN02585907-GCF_000651735.1-.-Mycobacterium_tuberculosis_TKK_03_0065.fna Mycobacterium tuberculosis complex
14 SRR6152844 Mycobacterium tuberculosis TKK_03_0072 7.82718e-05 0.0 399/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis; TKK_03_0072 Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN02585909 1448414 GCF_000651755.1 ./rcn/refseq-NZ-1448414-PRJNA224116-SAMN02585909-GCF_000651755.1-.-Mycobacterium_tuberculosis_TKK_03_0072.fna Mycobacterium tuberculosis complex
15 SRR6152844 Mycobacterium tuberculosis 7.82718e-05 0.0 399/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN03338743 1773 GCF_000972425.1 ./rcn/refseq-NZ-1773-PRJNA224116-SAMN03338743-GCF_000972425.1-.-Mycobacterium_tuberculosis.fna Mycobacterium tuberculosis complex
16 SRR6152844 Mycobacterium tuberculosis X122 7.82718e-05 0.0 399/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis; X122 Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN02471089 747368 GCF_000184025.1 ./rcn/refseq-NZ-747368-PRJNA224116-SAMN02471089-GCF_000184025.1-.-Mycobacterium_tuberculosis_X122.fna Mycobacterium tuberculosis complex
17 SRR6152991 Mycobacterium tuberculosis 0.000156838 0.0 398/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN03177496 1773 NZ_JUFU ./rcn/refseq-NZ-1773-PRJNA224116-SAMN03177496-NZ_JUFU-.-Mycobacterium_tuberculosis.fna Mycobacterium tuberculosis complex
18 SRR6152991 Mycobacterium tuberculosis UT0110 0.000156838 0.0 398/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis; UT0110 Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN02381044 1408967 GCF_000669155.1 ./rcn/refseq-NZ-1408967-PRJNA224116-SAMN02381044-GCF_000669155.1-.-Mycobacterium_tuberculosis_UT0110.fna Mycobacterium tuberculosis complex
19 SRR6152991 Mycobacterium tuberculosis KT-0022 0.000156838 0.0 398/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis; KT-0022 Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN02360562 1400884 GCF_000673755.1 ./rcn/refseq-NZ-1400884-PRJNA224116-SAMN02360562-GCF_000673755.1-.-Mycobacterium_tuberculosis_KT_0022.fna Mycobacterium tuberculosis complex
20 SRR6152991 Mycobacterium tuberculosis BTB07-275 0.000235701 0.0 397/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis; BTB07-275 Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN02414885 1423469 GCF_000677935.1 ./rcn/refseq-NZ-1423469-PRJNA224116-SAMN02414885-GCF_000677935.1-.-Mycobacterium_tuberculosis_BTB07_275.fna Mycobacterium tuberculosis complex
21 SRR6152991 Mycobacterium tuberculosis TKK_05SA_0021 0.000235701 0.0 397/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis; TKK_05SA_0021 Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN02586030 1448535 GCF_000653515.1 ./rcn/refseq-NZ-1448535-PRJNA224116-SAMN02586030-GCF_000653515.1-.-Mycobacterium_tuberculosis_TKK_05SA_0021.fna Mycobacterium tuberculosis complex
22 SRR6153036 Staphylococcus epidermidis AU12-03 0.0227453 0.0 213/400 Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; epidermidis; AU12-03 Staphylococcus epidermidis Staphylococcus Staphylococcaceae Bacillales Bacilli Firmicutes Bacteria PRJNA180900 SAMN01103171 1220510 NZ_AMCS ./rcn/refseq-NZ-1220510-PRJNA180900-SAMN01103171-NZ_AMCS-.-Staphylococcus_epidermidis_AU12_03.fna
23 SRR6153036 Staphylococcus epidermidis SK135 0.022937400000000004 0.0 212/400 Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; epidermidis; SK135 Staphylococcus epidermidis Staphylococcus Staphylococcaceae Bacillales Bacilli Firmicutes Bacteria PRJNA42967 SAMN00008358 596317 NZ_ADEY ./rcn/refseq-NZ-596317-PRJNA42967-SAMN00008358-NZ_ADEY-.-Staphylococcus_epidermidis_SK135.fna
24 SRR6153036 Staphylococcus epidermidis VCU109 0.022937400000000004 0.0 212/400 Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; epidermidis; VCU109 Staphylococcus epidermidis Staphylococcus Staphylococcaceae Bacillales Bacilli Firmicutes Bacteria PRJNA179852 SAMN00116832 904330 NZ_AFUA ./rcn/refseq-NZ-904330-PRJNA179852-SAMN00116832-NZ_AFUA-.-Staphylococcus_epidermidis_VCU109.fna
25 SRR6153036 Staphylococcus epidermidis 0.0233253 0.0 210/400 Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; epidermidis Staphylococcus epidermidis Staphylococcus Staphylococcaceae Bacillales Bacilli Firmicutes Bacteria PRJNA224116 SAMN02640611 1282 NZ_JMIF ./rcn/refseq-NZ-1282-PRJNA224116-SAMN02640611-NZ_JMIF-.-Staphylococcus_epidermidis.fna
26 SRR6153036 Staphylococcus epidermidis VCU125 0.024116 0.0 206/400 Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; epidermidis; VCU125 Staphylococcus epidermidis Staphylococcus Staphylococcaceae Bacillales Bacilli Firmicutes Bacteria PRJNA180069 SAMN00116836 904341 NZ_AHLF ./rcn/refseq-NZ-904341-PRJNA180069-SAMN00116836-NZ_AHLF-.-Staphylococcus_epidermidis_VCU125.fna
27 SRR6153231 Mycobacterium tuberculosis MD19051 0.0317811 0.0 172/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis; MD19051 Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN02584606 1447455 GCF_000650115.1 ./rcn/refseq-NZ-1447455-PRJNA224116-SAMN02584606-GCF_000650115.1-.-Mycobacterium_tuberculosis_MD19051.fna Mycobacterium tuberculosis complex
28 SRR6153231 Mycobacterium tuberculosis TKK-01-0080 0.0317811 0.0 172/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis; TKK-01-0080 Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN01828251 1267364 GCF_000659185.1 ./rcn/refseq-NZ-1267364-PRJNA224116-SAMN01828251-GCF_000659185.1-.-Mycobacterium_tuberculosis_TKK_01_0080.fna Mycobacterium tuberculosis complex
29 SRR6153231 Mycobacterium tuberculosis BTB12-315 0.0317811 0.0 172/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis; BTB12-315 Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN02414981 1423565 GCF_000679635.1 ./rcn/refseq-NZ-1423565-PRJNA224116-SAMN02414981-GCF_000679635.1-.-Mycobacterium_tuberculosis_BTB12_315.fna Mycobacterium tuberculosis complex
30 SRR6153231 Mycobacterium tuberculosis BTB05-552 0.0317811 0.0 172/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis; BTB05-552 Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN02472041 882099 GCF_000220435.1 ./rcn/refseq-NZ-882099-PRJNA224116-SAMN02472041-GCF_000220435.1-.-Mycobacterium_tuberculosis_BTB05_552.fna Mycobacterium tuberculosis complex
31 SRR6153231 Mycobacterium tuberculosis BTB05-559 0.0317811 0.0 172/400 Bacteria; Terrabacteria group; Actinobacteria; ; Corynebacteriales; Mycobacteriaceae; Mycobacterium; tuberculosis complex; Mycobacterium tuberculosis; BTB05-559 Mycobacterium tuberculosis Mycobacterium Mycobacteriaceae Corynebacteriales Actinobacteria Actinobacteria Bacteria PRJNA224116 SAMN02472033 882100 GCF_000220455.1 ./rcn/refseq-NZ-882100-PRJNA224116-SAMN02472033-GCF_000220455.1-.-Mycobacterium_tuberculosis_BTB05_559.fna Mycobacterium tuberculosis complex