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1 <tool id="consensus_clustering" name="PathOGiST - Consensus Clustering" version="1.0.0">
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2 <description>: Performs consensus clustering on multiple clusterings</description>
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3 <requirements>
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6
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4 <requirement type="package" version="0.3">pathogist</requirement>
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1
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5 </requirements>
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6
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7 <command><![CDATA[
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8 PATHOGIST consensus $constraints $distances $clusterings $fine_clusterings cc.tsv
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9 ]]></command>
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10
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11 <inputs>
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12 <param name="distances" type="data" format="tabular,txt" label="Distance Matrices"
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13 help="File contains paths to distance matrices for different clusterings"/>
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14 <param name="clusterings" type="data" format="tabular,txt" label="Clusterings"
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15 help="File contains paths to clusterings (matrices or lists of clustering assignments)"/>
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16 <param name="fine_clusterings" type="data" format="tabular,txt" label="Fine Clusterings"
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17 help="File contains names of the clusterings which are the finest"/>
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18 <param name="constraints" type="boolean" checked="false" truevalue="--all_constraints" falsevalue=""
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19 label="All constraints"
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20 help="Add all constraints to the optimization problem, not just those with mixed signs"/>
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21 </inputs>
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22
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23 <outputs>
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24 <data name="clustering" label="Consensus clustering on ${on_string}" format="tabular" from_work_dir="cc.tsv"/>
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25 </outputs>
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26
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27 <help>
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28
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29 </help>
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30
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31 <citations>
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32
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33 </citations>
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34 </tool>
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