|
1
|
1 <tool id="visualization" name="PathOGiST - Visualization" version="1.0.0">
|
|
|
2 <description>: Visualize distance matrix</description>
|
|
|
3 <requirements>
|
|
6
|
4 <requirement type="package" version="0.3">pathogist</requirement>
|
|
1
|
5 </requirements>
|
|
|
6
|
|
|
7 <command><![CDATA[
|
|
2
|
8 PATHOGIST visualize $distance $sample $pdf
|
|
1
|
9 ]]></command>
|
|
|
10
|
|
|
11 <inputs>
|
|
|
12 <param name="distance" type="data" format="tabular,txt" label="Distance Matrix"/>
|
|
|
13 <param name="sample" type="text" size="30" value="sample" label="Sample Name"/>
|
|
|
14 <param name="pdf" type="boolean" checked="false" truevalue="--save_pdf vis.pdf" falsevalue="" label="Save PDF"/>
|
|
|
15 </inputs>
|
|
|
16
|
|
|
17 <outputs>
|
|
|
18 <data name="diagram" label="Diagram of ${on_string}" format="png" from_work_dir="sample.png"/>
|
|
|
19 <data name="pdf_output" label="PDF of ${on_string}" format="pdf" from_work_dir="vis.pdf">
|
|
|
20 <filter>pdf == True</filter>
|
|
|
21 </data>
|
|
|
22 </outputs>
|
|
|
23
|
|
|
24 <help>
|
|
|
25
|
|
|
26 </help>
|
|
|
27
|
|
|
28 <citations>
|
|
|
29
|
|
|
30 </citations>
|
|
|
31 </tool>
|
