Mercurial > repos > matnguyen > pathogist

diff galaxy/tools/config_builder/config_builder.xml @ 6:a39471bf7d13 draft

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Update to pathogist0.3
author matnguyen
date Fri, 08 Mar 2019 18:42:31 -0500
parents 343bce47219b
children 4bfb3a8dd955
line wrap: on
line diff
--- a/galaxy/tools/config_builder/config_builder.xml	Tue Mar 05 03:59:00 2019 -0500
+++ b/galaxy/tools/config_builder/config_builder.xml	Fri Mar 08 18:42:31 2019 -0500
@@ -1,12 +1,10 @@
 <tool id="config_builder" name="PathOGiST - Config Builder" version="1.0.0">
     <description>: Creates and populates the config file to run PathOGiST</description>
     <requirements>
-        <requirement type="package" version="0.2.3">pathogist</requirement>
+        <requirement type="package" version="0.3">pathogist</requirement>
     </requirements>
 
     <command><![CDATA[
-        PATHOGIST all blank_config.yaml --new_config
-
         $__tool_directory__/config_builder
 
         #if $snippy.snippy_checkbox
@@ -88,7 +86,6 @@
             $adv_clustering.visualize
         #end if
 
-        blank_config.yaml
         $forward
         $reverse
         config.yaml