diff galaxy/tools/consensus_clustering/consensus_clustering.xml @ 1:c1b6f5fbbcad draft

Updated pathogist version

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/galaxy/tools/consensus_clustering/consensus_clustering.xml	Fri Feb 01 16:56:03 2019 -0500
@@ -0,0 +1,34 @@
+<tool id="consensus_clustering" name="PathOGiST - Consensus Clustering" version="1.0.0">
+    <description>: Performs consensus clustering on multiple clusterings</description>
+    <requirements>
+        <requirement type="package" version="0.2.3">pathogist</requirement>
+    </requirements>
+
+    <command><![CDATA[
+        PATHOGIST consensus $constraints $distances $clusterings $fine_clusterings cc.tsv
+    ]]></command>
+
+    <inputs>
+        <param name="distances" type="data" format="tabular,txt" label="Distance Matrices"
+               help="File contains paths to distance matrices for different clusterings"/>
+        <param name="clusterings" type="data" format="tabular,txt" label="Clusterings"
+               help="File contains paths to clusterings (matrices or lists of clustering assignments)"/>
+        <param name="fine_clusterings" type="data" format="tabular,txt" label="Fine Clusterings"
+               help="File contains names of the clusterings which are the finest"/>
+        <param name="constraints" type="boolean" checked="false" truevalue="--all_constraints" falsevalue=""
+               label="All constraints"
+               help="Add all constraints to the optimization problem, not just those with mixed signs"/>
+    </inputs>
+
+    <outputs>
+        <data name="clustering" label="Consensus clustering on ${on_string}" format="tabular" from_work_dir="cc.tsv"/>
+    </outputs>
+
+    <help>
+
+    </help>
+
+    <citations>
+
+    </citations>
+</tool>