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view galaxy/tools/run_all/run_all.xml @ 8:7708da43aefb draft

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Add run_all
author matnguyen
date Mon, 11 Mar 2019 03:27:37 -0400
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<tool id="run_all" name="PathOGiST - Run All" version="1.0.0">
    <description>: Runs the entire PathOGiST pipeline</description>
    <requirements>
        <requirement type="package" version="0.3">pathogist</requirement>
    </requirements>

    <command><![CDATA[
        PATHOGIST $config
    ]]></command>

    <inputs>
        <param name="config" type="data" format="yaml" label="Config YAML"
               help="Config YAML file for PathOGiST"/>
    </inputs>

    <outputs>
        <data name="clustering" label="Consensus clustering on ${on_string}" format="tabular" from_work_dir="cc.tsv"/>
    </outputs>

    <help>

    </help>

    <citations>

    </citations>
</tool>