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view galaxy/tools/distance/distance.xml @ 6:a39471bf7d13 draft

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Update to pathogist0.3
author matnguyen
date Fri, 08 Mar 2019 18:42:31 -0500
parents c1b6f5fbbcad
children
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<tool id="distance" name="PathOGiST - Distance" version="1.0.0">
    <description>: Construct distance matrix from genotyping data</description>
    <requirements>
        <requirement type="package" version="0.3">pathogist</requirement>
    </requirements>

    <command><![CDATA[
        PATHOGIST distance $genotyping $data_type matrix.tsv
    ]]></command>

    <inputs>
        <param name="genotyping" type="data" format="tabular,txt" label="Calls"
               help="File containing paths to signal calls"/>
        <param name="data_type" type="select" label="Data Type">
            <option value="MLST" selected="True">MLST</option>
            <option value="SNP">SNP</option>
            <option value="CNV">CNV</option>
        </param>
    </inputs>

    <outputs>
        <data name="matrix" label="Distance matrix of ${on_string}" format="tabular" from_work_dir="matrix.tsv"/>
    </outputs>

    <help>

    </help>

    <citations>

    </citations>
</tool>