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view galaxy/tools/concatenator/concatenator.xml @ 1:c1b6f5fbbcad draft

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Updated pathogist version
author matnguyen
date Fri, 01 Feb 2019 16:56:03 -0500
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children baf1e89b42eb
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<tool id="concatenator" name="Concatenator" version="1.0.0">
    <description>creates a list of accessions and the associated path to their variant calls</description>
    <requirements>
        <requirement type="package" version="0.2.3">pathogist</requirement>
    </requirements>

    <command><![CDATA[
        $__tool_directory__/concatenator -n #for $path in $paths# ${path.element_identifier} #end for#
        -i #for $path in $paths# $path #end for#
    ]]></command>

    <inputs>
        <param name="paths" type="data" label="Collection of calls" help="" optional="False" multiple="True"/>
    </inputs>

    <outputs>
        <data name="output" label="Paths of ${on_string}" format="txt" from_work_dir="paths.txt"/>
    </outputs>

    <help>

    </help>

    <citations>

    </citations>
</tool>