# HG changeset patch # User Matt Shirley # Date 1427764389 14400 # Node ID 4102c1600aa00eb40d3790513b616ba8ce5ac56a # Parent 847db227d9ce1938c154e0f0935e3be77b06df4a blargh diff -r 847db227d9ce -r 4102c1600aa0 tool_dependencies.xml --- a/tool_dependencies.xml Mon Mar 30 21:11:03 2015 -0400 +++ b/tool_dependencies.xml Mon Mar 30 21:13:09 2015 -0400 @@ -11,7 +11,7 @@ git clone https://github.com/mdshw5/ncbi-vdb.git git clone https://github.com/mdshw5/ngs.git LD_LIBRARY_PATH=LD_LIBRARY_PATH:$INSTALL_DIR/lib64:$INSTALL_DIR/lib - cd $INSTALL_DIR/ncbi-vdb + cd $INSTALL_DIR/src/ncbi-vdb ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build make -j2 make install @@ -19,7 +19,7 @@ ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build make -j2 make install - cd $INSTALL_DIR/sra-tools + cd $INSTALL_DIR/src/sra-tools ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build --with-ncbi-vdb-build=$INSTALL_DIR/build --with-ncbi-vdb-sources=$INSTALL_DIR/src/ncbi-vdb --with-ngs-sdk-prefix=$INSTALL_DIR make -j2 make install