Mercurial > repos > matt-shirley > sam_dump

changeset 2:39dab3a4578b draft

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bug fixes
author Matthew Shirley <mdshw5@gmail.com>
date Wed, 14 Nov 2012 16:55:35 -0500
parents d1dc85d3e490
children 0031b2d2e80b
files sam_dump.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/sam_dump.xml	Tue Nov 13 16:31:44 2012 -0500
+++ b/sam_dump.xml	Wed Nov 14 16:55:35 2012 -0500
@@ -1,6 +1,6 @@
 <tool id="sam_dump" name="Extract SAM" version="1.0.0">
   <description> format reads from NCBI SRA.</description>
-  <command>sam-dump $header $aligned $primary $input > $output</command>
+  <command>sam-dump $header $aligned $primary '$input' > $output</command>
   <version_string>sam-dump --version</version_string>
   <inputs>
     <param format="sra" name="input" type="data" label="sra archive"/>