Mercurial > repos > matt-shirley > sra_fetch
comparison sra_fetch.xml @ 4:8ce70ee5f335 draft
Updated wrapper script. First version that should work properly.
| author | Matthew Shirley <mdshw5@gmail.com> |
|---|---|
| date | Wed, 14 Nov 2012 13:13:32 -0500 |
| parents | abdb4762ebcb |
| children | 20a054a7e2fd |
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| 3:01dec8611542 | 4:8ce70ee5f335 |
|---|---|
| 1 <tool id="sra_fetch" name="Fetch SRA" version="1.0.0"> | 1 <tool id="sra_fetch" name="Fetch SRA" version="1.0.0"> |
| 2 <description> by accession from NCBI SRA.</description> | |
| 3 <command interpreter="python">sra_fetch.py $accession > $output</command> | |
| 4 <inputs> | |
| 5 <param name="accession" size="13" type="text" value="SRR000001" label="SRA run accession"/> | |
| 6 </inputs> | |
| 7 <outputs> | |
| 8 <data format="sra" name="output"/> | |
| 9 </outputs> | |
| 10 <requirements> | |
| 11 <requirement type="python">sra_fetch.py</requirement> | |
| 12 </requirements> | |
| 13 <help> | |
| 14 This tool fetches SRA archives from NCBI over FTP using the python ftplib. | |
| 15 </help> | |
| 2 </tool> | 16 </tool> |