Mercurial > repos > matt-shirley > sra_fetch
comparison sra_fetch.xml @ 7:d7708f338c82 draft
bug fixes
| author | Matthew Shirley <mdshw5@gmail.com> |
|---|---|
| date | Wed, 14 Nov 2012 16:55:51 -0500 |
| parents | 20a054a7e2fd |
| children |
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| 6:20a054a7e2fd | 7:d7708f338c82 |
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| 1 <tool id="sra_fetch" name="Fetch SRA" version="1.0.0"> | 1 <tool id="sra_fetch" name="Fetch SRA" version="1.0.0"> |
| 2 <description> by accession from NCBI SRA.</description> | 2 <description> by accession from NCBI SRA.</description> |
| 3 <command interpreter="python">sra_fetch.py $accession $output</command> | 3 <command interpreter="python">sra_fetch.py '$accession' '$output'</command> |
| 4 <inputs> | 4 <inputs> |
| 5 <param name="accession" size="13" type="text" value="SRR000001" label="SRA run accession"/> | 5 <param name="accession" size="13" type="text" value="SRR000001" label="SRA run accession"/> |
| 6 </inputs> | 6 </inputs> |
| 7 <outputs> | 7 <outputs> |
| 8 <data format="sra" name="output"/> | 8 <data format="sra" name="output" label="Fetch ${accession.value}"/> |
| 9 </outputs> | 9 </outputs> |
| 10 <requirements> | 10 <requirements> |
| 11 <requirement type="python">sra_fetch.py</requirement> | 11 <requirement type="python">sra_fetch.py</requirement> |
| 12 </requirements> | 12 </requirements> |
| 13 <help> | 13 <help> |