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comparison pfam_search/prova2 @ 0:68a3648c7d91 draft default tip

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author matteoc
date Thu, 22 Dec 2016 04:45:31 -0500
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1 <html>
2 <head></head>
3 <body>
4 Proteins with PFAM domains:
5 <br><br>
6 <div>
7 <table cellpadding="0" width=650>
8 <td>
9 <HR SIZE=3 WIDTH=80%>
10 <center><b>PROKKA_00001</b><br>
11 </center>
12 </td
13 <tr></tr>
14 <td bgcolor="#czb9dz">
15 <pre>
16 MENNLENLTIGVFAKAAGVNVETIRFYQRKGLLREPDKPYGSIRRYGEADVVRVKFVKSA
17 QRLGFSLDEIAELLRLDDGTHCEEASSLAEHKLKDVREKMADLARMETVLSELVCACHAR
18 KGNVSCPLIASLQGEAGLARSAM
19
20 </pre>
21 </td>
22 <tr></tr>
23 <td></td>
24 <tr></tr>
25 <td>
26 <p align="left">
27 <a href=http://pfam.xfam.org/family/PF09278> PF09278</a>
28 <p align="justify">MerR, DNA binding<br>Members of this family of DNA-binding domains are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold . </p>
29
30 </p>
31 </td>
32 <tr></tr>
33 <td></td>
34 <tr></tr>
35 <td bgcolor="#czb9dz">
36 <p align="left">
37 <a href=http://pfam.xfam.org/clan/CL0123> CL0123</a>
38 <p align="justify">This family contains a diverse range of mostly DNA-binding domains that contain a helix-turn-helix motif. </p>
39
40 </p>
41 </td>
42 <tr></tr>
43 <td></td>
44 <tr></tr>
45 <td>
46 <HR SIZE=3 WIDTH=80%>
47 <center><b>PROKKA_00009</b><br>
48 </center>
49 </td
50 <tr></tr>
51 <td bgcolor="#czb9dz">
52 <pre>
53 MATDTPRIPEQGVATLPDEAWERARRRAEIISPLAQSETVGHEAADMAAQALGLSRRQVY
54 VLIRRARQGSGLVTDLVPGQSGGGKGKGRLPEPVERVIHELLQKRFLTKQKRSLAAFHRE
55 VTQVCKAQKLRVPARNTVALRIASLDPRKVIRRREGQDAARDLQGVGGEPPAVTAPLEQV
56 QIDHTVIDLIVVDDRDRQPIGRPYLTLAIDVFTRCVLGMVVTLEAPSAVSVGLCLVHVAC
57 DKRPWLEGLNVEMDWQMSGKPLLLYLDNAAEFKSEALRRGCEQHGIRLDYRPLGQPHYGG
58 IVERIIGTAMQMIHDELPGTTFSNPDQRGDYDSENKAALTLRELERWLTLAVGTYHGSVH
59 NGLLQPPAARWAEAVARVGVPAVVTRATSFLVDFLPILRRTLTRTGFVIDHIHYYADGHC
60 C
61
62 </pre>
63 </td>
64 <tr></tr>
65 <td></td>
66 <tr></tr>
67 <td>
68 <p align="left">
69 <a href=http://pfam.xfam.org/family/PF13518> PF13518</a>
70 <p align="justify">Helix-turn-helix domain<br>This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding. </p>
71
72 </p>
73 </td>
74 <tr></tr>
75 <td></td>
76 <tr></tr>
77 <td bgcolor="#czb9dz">
78 <p align="left">
79 <a href=http://pfam.xfam.org/clan/CL0123> CL0123</a>
80 <p align="justify">This family contains a diverse range of mostly DNA-binding domains that contain a helix-turn-helix motif. </p>
81
82 </p>
83 </td>
84 <tr></tr>
85 <td></td>
86 <tr></tr>
87 <td>
88 <p align="left">
89 <a href=http://pfam.xfam.org/family/PF00665> PF00665</a>
90 <p align="justify">Integrase core domain<br>Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain Pfam:PF02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain Pfam:PF00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyses the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site . </p>
91
92 </p>
93 </td>
94 <tr></tr>
95 <td></td>
96 <tr></tr>
97 <td bgcolor="#czb9dz">
98 <p align="left">
99 <a href=http://pfam.xfam.org/clan/CL0219> CL0219</a>
100 <p align="justify">Ribonuclease H-like superfamily This clan includes a diverse set of nucleases that share a similar structure to Ribonuclease H. </p>
101
102 </p>
103 </td>
104 <tr></tr>
105 <td></td>
106 <tr></tr>
107 <td>
108 <HR SIZE=3 WIDTH=80%>
109 <center><b>PROKKA_00016</b><br>
110 </center>
111 </td
112 <tr></tr>
113 <td bgcolor="#czb9dz">
114 <pre>
115 MSDISRVKILSALMDGRAWTATELSSVANISASTASSHLSKLLDCQLITVVAQGKHRYFR
116 LAGKDIAELMESMMGISLNHGVHARVSTPVHLRKARTCYDHLAGEVAVKIYDSLCQQQWI
117 TENGSMITLSGIQYFHEMGIDVPSKHSRKICCACLDWSERRFHLGGYVGAALFSLYESKG
118 WLTRHLGYREVTITEKGYAAFKTHFH
119
120 </pre>
121 </td>
122 <tr></tr>
123 <td></td>
124 <tr></tr>
125 <td>
126 <p align="left">
127 <a href=http://pfam.xfam.org/family/PF12840> PF12840</a>
128 <p align="justify">Helix-turn-helix domain<br>This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins. </p>
129
130 </p>
131 </td>
132 <tr></tr>
133 <td></td>
134 <tr></tr>
135 <td bgcolor="#czb9dz">
136 <p align="left">
137 <a href=http://pfam.xfam.org/clan/CL0123> CL0123</a>
138 <p align="justify">This family contains a diverse range of mostly DNA-binding domains that contain a helix-turn-helix motif. </p>
139
140 </p>
141 </td>
142 <tr></tr>
143 <td></td>
144 <tr></tr>
145 </table>
146 </div>
147 </body>
148 </html>