comparison PCA_plot.xml @ 8:0cb68fb9010f draft

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author mb2013
date Tue, 20 May 2014 03:26:49 -0400
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7:5aaede6275f9 8:0cb68fb9010f
1 <tool id="PCA_plot" name="PCA_plot">
2 <description>Plottool for Principal Component </description>
3 <command interpreter="Rscript">PCA_plot.R $input "$title" "$x_label" "$y_label" $x_column $y_column $names $output</command>
4 <inputs>
5 <param name="input" type="data" format="csv" label="PCA coordinates" />
6 <param name = "title" size = "30" type = "text" value = "" label = "Main Title"/>
7 <param name = "x_label" size = "30" type = "text" value = "" label = "x axis label"/>
8 <param name = "y_label" size = "30" type = "text" value = "" label = "y axis label"/>
9 <param name = "x_column" size = "2" type = "integer" value = "1" label = "pca x axis"/>
10 <param name = "y_column" size = "2" type = "integer" value = "2" label = "pca y axis"/>
11 <param name = "names" type = "data" format = "csv" label = "data names"/>
12 </inputs>
13 <outputs>
14 <data format="png" name="output" />
15 </outputs>
16
17
18 <help>
19 **Function**
20
21 Plottool for plotting of Principal Components
22
23 **Input file**
24
25 Principal Components coordinates (csv format)
26
27 sample names (csv format)
28
29 **Tip**
30
31 Use **PCA** to generate Principal Components
32
33 Use the sample names of **DtaConverter** or create your own 'sample name file' in .csv format
34 </help>
35
36 </tool>