Mercurial > repos > mb2013 > nepenthes_3dpca
view PCA_plot.xml @ 19:f3d9bb18110a draft default tip
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author | mb2013 |
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date | Tue, 20 May 2014 03:30:07 -0400 |
parents | 0cb68fb9010f |
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<tool id="PCA_plot" name="PCA_plot"> <description>Plottool for Principal Component </description> <command interpreter="Rscript">PCA_plot.R $input "$title" "$x_label" "$y_label" $x_column $y_column $names $output</command> <inputs> <param name="input" type="data" format="csv" label="PCA coordinates" /> <param name = "title" size = "30" type = "text" value = "" label = "Main Title"/> <param name = "x_label" size = "30" type = "text" value = "" label = "x axis label"/> <param name = "y_label" size = "30" type = "text" value = "" label = "y axis label"/> <param name = "x_column" size = "2" type = "integer" value = "1" label = "pca x axis"/> <param name = "y_column" size = "2" type = "integer" value = "2" label = "pca y axis"/> <param name = "names" type = "data" format = "csv" label = "data names"/> </inputs> <outputs> <data format="png" name="output" /> </outputs> <help> **Function** Plottool for plotting of Principal Components **Input file** Principal Components coordinates (csv format) sample names (csv format) **Tip** Use **PCA** to generate Principal Components Use the sample names of **DtaConverter** or create your own 'sample name file' in .csv format </help> </tool>