comparison maxbin2.xml @ 8:9da9706f7ca9 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/maxbin2/ commit a1af4fcdd71f8a85f03db880bcc22751acd5e722

7:28a0b1446d2b

<tool id="maxbin2" name="MaxBin2" version="@MAXBIN_VERSION@+galaxy5">
    <description>clusters metagenomic contigs into bins</description>
    <macros>
        <token name="@MAXBIN_VERSION@">2.2.7</token>
        <xml name="contig">
            <param argument="-contig" type="data" format="fasta,fasta.gz" label="Contig file"/>

echo '$identifier' >> reads_list &&
        #end if
    #else
        #for $i, $r in enumerate($assembly.inputs.reads)
            #if $r
                #set $identifier = re.sub('[^\s\w\-\\.]', '_', str($r.element_identifier))
                #set $newid = $identifier +  '_'  + str($i)
                #if $r.ext.endswith(".gz")
gunzip -c '$r' > '$newid' &&                        
echo '$newid' >> reads_list &&
                #else

8:9da9706f7ca9

<tool id="maxbin2" name="MaxBin2" version="@MAXBIN_VERSION@+galaxy6">
    <description>clusters metagenomic contigs into bins</description>
    <macros>
        <token name="@MAXBIN_VERSION@">2.2.7</token>
        <xml name="contig">
            <param argument="-contig" type="data" format="fasta,fasta.gz" label="Contig file"/>

echo '$identifier' >> reads_list &&
        #end if
    #else
        #for $i, $r in enumerate($assembly.inputs.reads)
            #if $r
                #set $identifier = re.sub('[^\w\-\\.]', '_', str($r.element_identifier))
                #set $newid = $identifier +  '_'  + str($i)
                #if $r.ext.endswith(".gz")
gunzip -c '$r' > '$newid' &&                        
echo '$newid' >> reads_list &&
                #else