Mercurial > repos > mbernt > maxbin2
diff test-data/3/out.idba.out @ 0:35aa0df55a62 draft
planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/maxbin2 commit 8e118a4d24047e2c62912b962e854f789d6ff559-dirty
author | mbernt |
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date | Thu, 28 Jun 2018 08:49:29 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/3/out.idba.out Thu Jun 28 08:49:29 2018 -0400 @@ -0,0 +1,53 @@ +number of threads 1 +reads 21484 +long reads 0 +extra reads 0 +read_length 93 +kmer 60 +kmers 189823 188895 +merge bubble 2 +contigs: 292 n50: 586 max: 2560 mean: 547 total length: 159906 n80: 365 +aligned 14823 reads +confirmed bases: 135234 correct reads: 11116 bases: 300 +kmer 20 +kmers 228328 228212 +merge bubble 14 +contigs: 233 n50: 3245 max: 7554 mean: 965 total length: 224992 n80: 896 +aligned 19152 reads +confirmed bases: 181101 correct reads: 12296 bases: 35 +distance mean 1000 sd 0 +seed contigs 146 local contigs 466 +kmer 40 +kmers 227514 227453 +merge bubble 6 +contigs: 153 n50: 3744 max: 10866 mean: 1506 total length: 230550 n80: 1749 +aligned 19655 reads +confirmed bases: 186149 correct reads: 12597 bases: 5 +distance mean 999.98 sd 0.1398 +seed contigs 119 local contigs 306 +kmer 60 +kmers 225678 225589 +merge bubble 3 +contigs: 121 n50: 3826 max: 10866 mean: 1897 total length: 229604 n80: 1976 +aligned 19732 reads +confirmed bases: 186576 correct reads: 12645 bases: 0 +distance mean 999.98 sd 0.138491 +seed contigs 114 local contigs 242 +kmer 80 +kmers 222596 222502 +merge bubble 2 +contigs: 109 n50: 3826 max: 10866 mean: 2099 total length: 228800 n80: 2256 +aligned 19712 reads +confirmed bases: 186604 correct reads: 12655 bases: 0 +distance mean 999.981 sd 0.138243 +seed contigs 108 local contigs 218 +kmer 100 +kmers 219702 219610 +merge bubble 0 +contigs: 106 n50: 3826 max: 10866 mean: 2152 total length: 228179 n80: 2034 +reads 21484 +aligned 19623 reads +distance mean 999.975 sd 0.155413 +expected coverage 0.0899218 +edgs 60 +contigs: 64 n50: 4891 max: 11700 mean: 3610 total length: 231059 n80: 3499