comparison general.xml @ 3:9c34e2ececc9 draft default tip

planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/scripting/ commit eb10798d29ff874c5239afaebeaa47d94bc7bc37

2:2eb0532a911c

<tool id="singularity_scriptrunner" name="scriptrunner" version="0.2" profile="22.05">
    <description>singularity</description>
    <creator>
        <person givenName="Matthias" familyName="Bernt" email="[e-mail]" />
        <organization name="Helmholtz Centre for Environmental Research - UFZ" url="https://www.ufz.de/"/>
    </creator>

        $image.fields.container_type
        exec
            ## --cpus 1 # disabled because rootless cgroups requires cgroups v2
            ## --memory "\$((1024 * \${GALAY_MEMORY_MB:-8192}))" # not needed on EVE
            ## bind Galaxy's file dir, otherwise we need to copy input file to JWD
            --bind '$__app__.config.file_path:$__app__.config.file_path'
            $image.fields.container_params
        '$image.fields.image'
        $image.fields.interpreter 'script/script'
        #for $p in $parameters
            #if $p.type_cond.type_sel == "data"

3:9c34e2ececc9

<tool id="singularity_scriptrunner" name="scriptrunner" version="0.3" profile="22.05">
    <description>singularity</description>
    <creator>
        <person givenName="Matthias" familyName="Bernt" email="[e-mail]" />
        <organization name="Helmholtz Centre for Environmental Research - UFZ" url="https://www.ufz.de/"/>
    </creator>

        $image.fields.container_type
        exec
            ## --cpus 1 # disabled because rootless cgroups requires cgroups v2
            ## --memory "\$((1024 * \${GALAY_MEMORY_MB:-8192}))" # not needed on EVE
            ## bind Galaxy's file dir, otherwise we need to copy input file to JWD
            --bind '$__app__.config.file_path:$__app__.config.file_path:ro'
            $image.fields.container_params
        '$image.fields.image'
        $image.fields.interpreter 'script/script'
        #for $p in $parameters
            #if $p.type_cond.type_sel == "data"