Mercurial > repos > mbernt > singularity_scriptrunner
diff test-data/scripting_images.loc @ 2:2eb0532a911c draft default tip
planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/scripting/ commit 8c309a4891e29a0fd273f9edc37292e1f3965317
author | ufz |
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date | Fri, 11 Apr 2025 15:20:00 +0000 |
parents | 9512201417a5 |
children |
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--- a/test-data/scripting_images.loc Sun Aug 06 16:01:44 2023 +0000 +++ b/test-data/scripting_images.loc Fri Apr 11 15:20:00 2025 +0000 @@ -1,10 +1,17 @@ # <id> <name> <image_name> <interpreter> <container_type> <container_params> -# docker://continuumio/anaconda3 -python_continuumio_anaconda python (continuumio/anaconda) /tmp/anaconda3_latest.sif python singularity --cleanenv --network none --no-mount bind-paths +# docker://python_3.10 +python_python python (python) /tmp/python_3.10-slim.sif python mkdir -p "$HOME/.local/lib/python3.10/site-packages" && singularity --no-home --cleanenv --home $HOME --env PYTHONUSERBASE="$HOME/.local" + +# docker://python_3.10 +python_python_noinstall python (python no install) /tmp/python_3.10-slim.sif python singularity --no-home --cleanenv + # docker://rocker/tidyverse -r_rocker_tidyverse R (tidyverse) /tmp/tidyverse_latest.sif Rscript apptainer +r_rocker_tidyverse R (tidyverse) /tmp/tidyverse_latest.sif Rscript mkdir -p "$HOME/custom_R_library" && singularity --no-home --cleanenv --home $HOME --env R_LIBS_USER="$HOME/custom_R_library" + +bash_rocker_tidyverse bash (R tidyverse) /tmp/tidyverse_latest.sif bash singularity --no-home --cleanenv --home $HOME + # docker://rocker/tidyverse -bash_continuumio_anaconda bash (continuumio/anaconda) /tmp/anaconda3_latest.sif bash apptainer --cleanenv --network none --no-mount bind-paths \ No newline at end of file +bash_python bash (python) /tmp/python_3.10-slim.sif bash singularity --no-home --cleanenv --home $HOME