Mercurial > repos > mbernt > singularity_scriptrunner
changeset 1:0da37b889932 draft default tip
planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/scripting/ commit 5c71b60920e887c5fdb2c0ca0118927b1231bde7
| author | mbernt |
|---|---|
| date | Sun, 06 Aug 2023 16:01:44 +0000 |
| parents | 9512201417a5 |
| children | |
| files | tool-data/scripting_images.loc tool-data/scripting_images.loc.sample |
| diffstat | 2 files changed, 20 insertions(+), 20 deletions(-) [+] |
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--- a/tool-data/scripting_images.loc Sun Aug 06 15:21:11 2023 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,20 +0,0 @@ -# the following six tab separated columns need to be set -# -# id -# a unique id to be used -# name -# name shown to the user -# image_name -# a path or URL to an image to use. Note that when using URLs -# it images will be pulled on the fly to the job working dir -# and the user executing the tools needs to take care of the -# image cache. -# interpreter -# the interpreter that should be applied to the user supplied scripts -# container_type -# apptainer/singularity -# container_params -# parameters to be passed to singularity/apptainer -# --cleanenv --network none --no-mount bind-paths --cpus "\${GALAXY_SLOTS:-1}" -# -# <id>\t<name>\t<image_name>\t<interpreter>\t<container_type>\t<container_params>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/scripting_images.loc.sample Sun Aug 06 16:01:44 2023 +0000 @@ -0,0 +1,20 @@ +# the following six tab separated columns need to be set +# +# id +# a unique id to be used +# name +# name shown to the user +# image_name +# a path or URL to an image to use. Note that when using URLs +# it images will be pulled on the fly to the job working dir +# and the user executing the tools needs to take care of the +# image cache. +# interpreter +# the interpreter that should be applied to the user supplied scripts +# container_type +# apptainer/singularity +# container_params +# parameters to be passed to singularity/apptainer +# --cleanenv --network none --no-mount bind-paths --cpus "\${GALAXY_SLOTS:-1}" +# +# <id>\t<name>\t<image_name>\t<interpreter>\t<container_type>\t<container_params>