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view genephys/extractgenomicsequencefromsegment.xml @ 1:bce0eb022a9c draft

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author mcharles
date Tue, 12 Aug 2014 08:15:22 -0400
parents 448b10ffb095
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<tool id="extractgenomicsequencefromsegment" name="extractgenomicsequencefromsegment" version="0.01">
<description>Extract the genomic sequence corresponding to a genomic segment (format : chr:start..stop)</description>
<command interpreter="perl">
    extractgenomicsequencefromsegment.pl $input_segment $input_assembly > $output_file 
</command>
<inputs>
<param name="input_segment"  type="data" format="txt" label="Select a suitable input SEGMENT file from your history"/>
<param name="input_assembly"  type="data" format="fasta" label="Select a suitable input ASSEMBLY file from your history"/>
</inputs>
<outputs>
 <data name="output_file" format="fasta" label="${tool.name} on ${on_string}"/>
</outputs>

<help>



</help>
</tool>