# HG changeset patch # User mcharles # Date 1410343473 14400 # Node ID 5b6c476166a766b6396d1df436f9771e2808d8ca # Parent 5c0e8f82bbbf8cbac5d563dabd384dba133347f0 Uploaded diff -r 5c0e8f82bbbf -r 5b6c476166a7 rapsodyn/Galaxy-Workflow-rapsosnp_v1.15_-1x.ga --- a/rapsodyn/Galaxy-Workflow-rapsosnp_v1.15_-1x.ga Wed Sep 10 05:14:53 2014 -0400 +++ b/rapsodyn/Galaxy-Workflow-rapsosnp_v1.15_-1x.ga Wed Sep 10 06:04:33 2014 -0400 @@ -11,18 +11,18 @@ "inputs": [ { "description": "", - "name": "ASSEMBLY" + "name": "READ1" } ], "name": "Input dataset", "outputs": [], "position": { - "left": 200, - "top": 319.48333740234375 + "left": 245, + "top": 731.4833374023438 }, "tool_errors": null, "tool_id": null, - "tool_state": "{\"name\": \"ASSEMBLY\"}", + "tool_state": "{\"name\": \"READ1\"}", "tool_version": null, "type": "data_input", "user_outputs": [] @@ -34,18 +34,18 @@ "inputs": [ { "description": "", - "name": "READ1" + "name": "ASSEMBLY" } ], "name": "Input dataset", "outputs": [], "position": { - "left": 200, - "top": 404.48333740234375 + "left": 2446, + "top": 395.48333740234375 }, "tool_errors": null, "tool_id": null, - "tool_state": "{\"name\": \"READ1\"}", + "tool_state": "{\"name\": \"ASSEMBLY\"}", "tool_version": null, "type": "data_input", "user_outputs": [] @@ -63,8 +63,8 @@ "name": "Input dataset", "outputs": [], "position": { - "left": 200, - "top": 489.48333740234375 + "left": 245, + "top": 816.4833374023438 }, "tool_errors": null, "tool_id": null, @@ -86,8 +86,8 @@ "name": "Input dataset", "outputs": [], "position": { - "left": 200, - "top": 574.4833374023438 + "left": 2031, + "top": 857.4833374023438 }, "tool_errors": null, "tool_id": null, @@ -101,7 +101,7 @@ "id": 4, "input_connections": { "input_fasta": { - "id": 0, + "id": 1, "output_name": "output" } }, @@ -114,8 +114,8 @@ } ], "position": { - "left": 428, - "top": 319.48333740234375 + "left": 473, + "top": 646.4833374023438 }, "post_job_actions": {}, "tool_errors": null, @@ -130,7 +130,7 @@ "id": 5, "input_connections": { "input_read1_file": { - "id": 1, + "id": 0, "output_name": "output" }, "input_read2_file": { @@ -151,8 +151,8 @@ } ], "position": { - "left": 428, - "top": 450.48333740234375 + "left": 483, + "top": 790.5 }, "post_job_actions": {}, "tool_errors": null, @@ -180,8 +180,8 @@ } ], "position": { - "left": 756, - "top": 319.48333740234375 + "left": 2688, + "top": 259.48333740234375 }, "post_job_actions": {}, "tool_errors": null, @@ -196,7 +196,7 @@ "id": 7, "input_connections": { "genomeSource|ownFile": { - "id": 0, + "id": 1, "output_name": "output" }, "paired|input1": { @@ -217,8 +217,8 @@ } ], "position": { - "left": 756, - "top": 477.48333740234375 + "left": 801, + "top": 804.4833374023438 }, "post_job_actions": {}, "tool_errors": null, @@ -246,13 +246,13 @@ } ], "position": { - "left": 1084, - "top": 319.48333740234375 + "left": 1126, + "top": 787.5 }, "post_job_actions": {}, "tool_errors": null, - "tool_id": "toolshed.g2.bx.psu.edu/repos/mcharles/rapsodyn/filtersam_mapped_and_unique/0.01", - "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"chromInfo\": \"\\\"/home/galaxy/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"input_sam_file\": \"null\"}", + "tool_id": "filtersam_mapped_and_unique", + "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input_sam_file\": \"null\"}", "tool_version": "0.01", "type": "tool", "user_outputs": [] @@ -266,7 +266,7 @@ "output_name": "output_file" }, "source|ref_file": { - "id": 0, + "id": 1, "output_name": "output" } }, @@ -279,8 +279,8 @@ } ], "position": { - "left": 1411.9998779296875, - "top": 319.48333740234375 + "left": 1457, + "top": 646.4833374023438 }, "post_job_actions": {}, "tool_errors": null, @@ -299,7 +299,7 @@ "output_name": "output1" }, "reference_source|ref_file": { - "id": 0, + "id": 1, "output_name": "output" } }, @@ -316,8 +316,8 @@ } ], "position": { - "left": 1639.9998779296875, - "top": 319.48333740234375 + "left": 1685, + "top": 646.4833374023438 }, "post_job_actions": {}, "tool_errors": null, @@ -345,8 +345,8 @@ } ], "position": { - "left": 1965.9998779296875, - "top": 319.48333740234375 + "left": 2024, + "top": 655.5 }, "post_job_actions": {}, "tool_errors": null, @@ -378,12 +378,12 @@ } ], "position": { - "left": 2293.9999389648438, - "top": 319.48333740234375 + "left": 2355, + "top": 654.5 }, "post_job_actions": {}, "tool_errors": null, - "tool_id": "toolshed.g2.bx.psu.edu/repos/mcharles/rapsodyn/listfiltering/0.01", + "tool_id": "listfiltering", "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"input_listB\": \"null\", \"nb_col\": \"\\\"2\\\"\", \"input_listA\": \"null\"}", "tool_version": "0.01", "type": "tool", @@ -394,7 +394,7 @@ "id": 13, "input_connections": { "input_assembly_file": { - 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