annotate rapsodyn/SplitFile2x.xml @ 2:761fecc07fa9 draft

Uploaded
author mcharles
date Thu, 11 Sep 2014 03:10:47 -0400
parents 442a7c88b886
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
1 <tool id="SplitFile2x" name="SplitFile2x" version="0.01">
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
2 <description>Split file in 2</description>
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
3 <command interpreter="perl">
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
4 SplitFile2x.pl $input_file $line_number $output_file1 $output_file2
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
5 </command>
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
6 <inputs>
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
7 <param name="out_format" type="select" label="Format">
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
8 <option value="pileup">pileup</option>
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
9 <option value="fastq">fastq</option>
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
10 <option value="fastqsanger">fastqsanger</option>
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
11 <option value="sam">sam</option>
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
12 <option value="fasta">fasta</option>
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
13 </param>
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
14 <param name="input_file" type="data" format="fastq,fastqsanger,fastqillumina,pileup,sam,fasta" label="Select a suitable input file from your history"/>
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
15 <param name="line_number" type="integer" value="4" label="Number of line read at a time before splitting"/>
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
16 </inputs>
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
17 <outputs>
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
18 <data name="output_file1" format="txt" label="PART1 on ${on_string}">
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
19 <change_format>
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
20 <when input="out_format" value="pileup" format="pileup" />
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
21 <when input="out_format" value="fastq" format="fastq" />
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
22 <when input="out_format" value="sam" format="sam" />
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
23 <when input="out_format" value="fasta" format="fasta" />
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
24 <when input="out_format" value="fastqsanger" format="fastqsanger" />
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
25 </change_format>
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
26 </data>
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
27 <data name="output_file2" format="txt" label="PART2 on ${on_string}">
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
28 <change_format>
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
29 <when input="out_format" value="pileup" format="pileup" />
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
30 <when input="out_format" value="fastq" format="fastq" />
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
31 <when input="out_format" value="sam" format="sam" />
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
32 <when input="out_format" value="fasta" format="fasta" />
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
33 <when input="out_format" value="fastqsanger" format="fastqsanger" />
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
34 </change_format>
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
35 </data>
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
36
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
37 </outputs>
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
38
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
39 <help>
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
40
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
41
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
42
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
43 </help>
442a7c88b886 Uploaded
mcharles
parents:
diff changeset
44 </tool>