comparison rapsodyn/PrepareFastqLight.xml @ 0:442a7c88b886 draft

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author mcharles
date Wed, 10 Sep 2014 09:18:15 -0400
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children 3f7b0788a1c4
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1 <tool id="PrepareFastqLight" name="PrepareFastqLight" version="0.01">
2 <description>Fastq preparation</description>
3 <command interpreter="perl">
4 PrepareFastqLight.pl $input_read1_file $input_read2_file $output_read1_file $output_read2_file $quality_type $min_quality $min_length
5 </command>
6 <inputs>
7 <param name="input_read1_file" type="data" format="txt,fastq" label="Select a suitable FASTQ READ 1 file from your history"/>
8 <param name="input_read2_file" type="data" format="txt,fastq" label="Select a suitable FASTQ READ 2 file from your history"/>
9 <param name="quality_type" type="select" label="Select input quality format">
10 <option value="sanger">Sanger</option>
11 <option value="illumina">Illumina 1.3-1.7</option>
12 </param>
13 <param name="min_quality" type="integer" value="30" label="Minimum quality for 5' and 3' trimming "/>
14 <param name="min_length" type="integer" value="30" label="Minimum sequence length after trimming"/>
15 </inputs>
16 <outputs>
17 <data name="output_read1_file" format="fastqsanger" label="${tool.name} on ${on_string}"/>
18 <data name="output_read2_file" format="fastqsanger" label="${tool.name} on ${on_string}"/>
19 </outputs>
20
21 <help>
22
23
24
25 </help>
26 </tool>